Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0310.Seq
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    30   0.30 
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   2.1  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    27   2.8  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   2.8  
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...    26   6.5  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.5  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   6.5  
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    26   6.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   6.5  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   8.6  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   8.6  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   8.6  

>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 296 ALVHWQGLRPGRDGSVGGLWSGARQQTSM 210
           A+ +W G++P  DG +GGL +G   QT +
Sbjct: 10  AIDYWNGVQPTVDGMLGGLGTGRIPQTDV 38


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 110 HSPSWPSEVWHERSSFVETPGTRVDGALSAT 18
           HS ++P+E+W  R    E P  + D  L+ T
Sbjct: 45  HSLTFPTEIWETRDGLFEEPVGKGDSHLNHT 75


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 626 GELFYDIALLFLRDFHWISAPKRGNGVSSXRXR 724
           G++F    LL L   +W+SA ++ NGV     R
Sbjct: 332 GQVFAVFVLLPLNQKYWLSAVQKNNGVPEPEFR 364


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 89  PTAKKGSASTITCAMRPITPLSLTEQTSSI*ESAVARVHRTST 217
           P     + +T TC+ RP   +S    TS++ ES  +    TST
Sbjct: 567 PEETTTTMTTTTCSSRPEETISTVSTTSTVSESGSSSASITST 609


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 578 IRNISPSCSACPIRRL*SSVPWR-RNVVSGREHHVRMDQRA 459
           +  + PS   C I RL S V W+ +N+VS  E   ++   A
Sbjct: 127 VLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKSAA 167


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 29  GLHRPWCL 52
           GLHRPWCL
Sbjct: 685 GLHRPWCL 692


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 141  IGRIAQVIVDALPFLAVGGLARKVIVRRDARHQGRWSPI 25
            +GR+A+V++D    L   G A +  + R +R  G ++P+
Sbjct: 1313 LGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLYAPL 1350


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 171 DVCSVSDNGVIGRIAQVIVDALPFLAV 91
           ++  +  NG++ RI QV+ D L +L++
Sbjct: 304 EIDEIGVNGIVERIKQVVGDTLVYLSI 330


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 141  IGRIAQVIVDALPFLAVGGLARKVIVRRDARHQGRWSPI 25
            +GR+A+V++D    L   G A +  + R +R  G ++P+
Sbjct: 1313 LGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLYAPL 1350


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +1

Query: 472 IRTWCSRPLTTLRRQGTEDQSRRMGHAEH 558
           ++ W  RP + ++ Q T+D S+ +  A++
Sbjct: 115 LKDWLQRPYSFVQFQNTDDASKALSEAQN 143


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 367 PNLVSPSTSPVVRKATPSGFR 305
           PN +SPST P++  +  S FR
Sbjct: 253 PNRLSPSTQPLLSNSRHSSFR 273


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 626 GELFYDIALLFLRDFHWISAPKRGNGVSSXR 718
           G +FY   +  +R+F + SA KR + VS+ R
Sbjct: 571 GSVFYKGKVQIIRNFQFSSALKRQSSVSNVR 601


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,482
Number of Sequences: 5004
Number of extensions: 64223
Number of successful extensions: 210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)