Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0310.Seq
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0498 + 3734498-3734976,3736176-3736800 32 0.55
01_05_0242 + 19828521-19829252 30 2.2
05_04_0256 - 19465636-19466709,19467649-19467765,19468168-194682... 29 2.9
04_04_1575 + 34548774-34549109,34549979-34550185 29 2.9
06_01_0389 + 2779790-2779891,2780378-2781912,2782087-2782135,278... 29 3.9
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 29 3.9
02_04_0470 - 23183925-23184743,23184929-23185153 29 5.2
07_03_0706 + 20850634-20850830,20851401-20851576,20851706-20852253 28 6.8
04_04_1608 - 34753321-34753332,34753434-34753628,34753868-347539... 28 6.8
10_05_0029 - 8319233-8319408,8319516-8319584,8319754-8319838,832... 28 9.0
05_04_0008 - 17098168-17099097 28 9.0
03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269 28 9.0
02_01_0072 - 502785-504038 28 9.0
>07_01_0498 + 3734498-3734976,3736176-3736800
Length = 367
Score = 31.9 bits (69), Expect = 0.55
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 171 DVCSVSDNGVIGRIAQVIVDALPFLAVGGLARKV 70
D +D+GV+ IA +VD FLA GG+ R V
Sbjct: 26 DEAPAADDGVVEEIAIPVVDLAAFLASGGIGRDV 59
>01_05_0242 + 19828521-19829252
Length = 243
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = -2
Query: 359 GLAVHVARGPEGNAVRVPPAAALVHWQGLRPGRDGSVGGLWSGARQQ 219
G + VA G +G A R AAA G R R+G V G W GAR++
Sbjct: 151 GGSCDVADG-DGTAGRHTGAAAGAAGDGRRHRREGKVMGRWLGARER 196
>05_04_0256 -
19465636-19466709,19467649-19467765,19468168-19468279,
19469019-19469167,19469378-19469449,19469544-19469609,
19471945-19472073,19474539-19474647,19475225-19475304,
19475408-19475533,19475607-19475657,19475738-19475920,
19476019-19476105,19476184-19476294,19476692-19476796,
19477513-19477678,19477769-19477941,19478022-19478094,
19479472-19479655,19479759-19480203
Length = 1203
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 649 SYVVEQFPLLKSLCITISLTVLS*YGIYLLRVLRVPFAG 533
S + + P+ S+ + SL L+ GI+ R+PFAG
Sbjct: 470 SVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAG 508
>04_04_1575 + 34548774-34549109,34549979-34550185
Length = 180
Score = 29.5 bits (63), Expect = 2.9
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -2
Query: 593 DCPVLIRNISPSCSACPIRRL*SSVPWRRNVVSGREHHVRMDQRASPYVNVQLLSFGLVV 414
D PVL+ ++ C C R + V W GR V++D A+P + + +GL
Sbjct: 85 DLPVLVDFVADWCGPC--RLIAPVVDWAAEEYEGRLKIVKIDHDANPQLIEEYKVYGLPS 142
Query: 413 IDWFNLEDG-DHPGELSE 363
+ F +DG + PG E
Sbjct: 143 LILF--KDGKEVPGSRRE 158
>06_01_0389 +
2779790-2779891,2780378-2781912,2782087-2782135,
2782620-2782683,2782755-2782843
Length = 612
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +3
Query: 198 VFIVHRRLLSGSRPETANRPITPRPETLPMNQGCGW---RNPDGVAFRTTGDVDGE 356
V ++H RLL + TA PI R E+L +N C W P VA TT + D E
Sbjct: 278 VTVLHCRLLHTAECLTALSPIRDRIESLEIN--CVWNTTEQPCSVANGTTTECDPE 331
>01_03_0256 + 14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 345 VDGETKFGEFPWMVAILKVEPVDDNEP 425
+DGE EFP+ + VE DD+EP
Sbjct: 1197 LDGEESLAEFPYASFLQTVETSDDSEP 1223
>02_04_0470 - 23183925-23184743,23184929-23185153
Length = 347
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 232 PDQRPPTDPSRPGRRPCQ 285
PD RPP P + RRPC+
Sbjct: 259 PDPRPPPPPPKARRRPCR 276
>07_03_0706 + 20850634-20850830,20851401-20851576,20851706-20852253
Length = 306
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Frame = -2
Query: 455 PYVNVQLLSFGLV----VIDWFNLEDGDHPGELSELGLAVHVARGPEGNAVRVPPAAALV 288
P + +QL +G V V WF +L G G GN PPAAA
Sbjct: 164 PRIRMQLQEYGQVGDANVFYWFQNRKSRSKNKLRSGGTG-RAGLGLGGNRASEPPAAATA 222
Query: 287 HWQGLRP 267
H + + P
Sbjct: 223 HREAVAP 229
>04_04_1608 -
34753321-34753332,34753434-34753628,34753868-34753972,
34754176-34754219,34754645-34754700,34755986-34756146
Length = 190
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 310 FRQPQPWFIGRVSGLGV-MGLLAVSG 236
+R P PWFI GLGV M LL SG
Sbjct: 48 YRLPVPWFIYTFIGLGVFMCLLTCSG 73
>10_05_0029 -
8319233-8319408,8319516-8319584,8319754-8319838,
8320112-8320225
Length = 147
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -3
Query: 358 VSPSTSPVVRKATPSGFRQPQPWFIGRVSGLGVMGLLAVSGREP 227
++P TSP+ + +P GF P + + G+ GLLA G EP
Sbjct: 10 LNPPTSPLPEQQSPQGFCHPNRRRLRFLQGILRYGLLA-EGWEP 52
>05_04_0008 - 17098168-17099097
Length = 309
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/46 (43%), Positives = 23/46 (50%)
Frame = -1
Query: 555 FCVSHSPALIFSSLAAQRSERP*APRSDGSASLPLRKRSASVLRAR 418
F +SHSP L+F A +R R P DG LR S S L AR
Sbjct: 13 FSLSHSPLLLFLGQAGRRLVRR-PPGQDGRGGGQLRDGSRS-LEAR 56
>03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269
Length = 309
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 513 AAQRSERP*APRSDGSASLPLRKRSASVLRARCHRL 406
AA R RP APR++G+ +K A RAR R+
Sbjct: 107 AASRRPRP-APRAEGAGGAAAKKAQADEYRARKQRV 141
>02_01_0072 - 502785-504038
Length = 417
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/49 (42%), Positives = 21/49 (42%)
Frame = -2
Query: 599 FLDCPVLIRNISPSCSACPIRRL*SSVPWRRNVVSGREHHVRMDQRASP 453
F D L SPSC A P R L SV RN SGR H A P
Sbjct: 163 FPDAAKLAAAPSPSCRAGPARALSFSV--SRNWSSGRHVHAMAAHLAPP 209
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,196,598
Number of Sequences: 37544
Number of extensions: 539445
Number of successful extensions: 1798
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1798
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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