Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0310.Seq
(744 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 31 0.65
AL132862-14|CAB60548.1| 541|Caenorhabditis elegans Hypothetical... 31 0.86
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 26 2.0
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 26 2.0
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 26 2.0
Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical p... 30 2.0
Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 3.5
AL023828-22|CAA19467.2| 272|Caenorhabditis elegans Hypothetical... 29 3.5
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 25 5.6
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 28 6.1
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 28 6.1
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 23 9.4
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 25 9.4
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 25 9.4
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 25 9.4
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = +3
Query: 456 GGSLIHPNVVLTAAHYVAPPR 518
GGSLI PN VLTAAH A R
Sbjct: 85 GGSLIDPNFVLTAAHCFAKDR 105
>AL132862-14|CAB60548.1| 541|Caenorhabditis elegans Hypothetical
protein Y73F8A.20 protein.
Length = 541
Score = 31.1 bits (67), Expect = 0.86
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 326 GNAVRVPPAAALVHWQGLRPGRDG-SVGGLWSGARQQTSMY 207
G + + PP A+L HW L+ G G S +G + QT+++
Sbjct: 329 GQSQKAPPMASLWHWASLKVGSSGISANVKKNGEKSQTTLH 369
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 25.8 bits (54), Expect(2) = 2.0
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +1
Query: 187 GSGPCSSYIDVCCLAPDQRPPTDPSRPGR 273
G G S + CCL P P +PGR
Sbjct: 88 GGGAQSGSCESCCLPGPPGPAGTPGKPGR 116
Score = 22.6 bits (46), Expect(2) = 2.0
Identities = 9/30 (30%), Positives = 13/30 (43%)
Frame = +1
Query: 247 PTDPSRPGRRPCQ*TRXXXXXXXXXXPSGP 336
P +P RP ++PC+ P GP
Sbjct: 126 PGNPGRPPQQPCEPITPPPCKPCPQGPPGP 155
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 25.8 bits (54), Expect(2) = 2.0
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +1
Query: 187 GSGPCSSYIDVCCLAPDQRPPTDPSRPGR 273
G G S + CCL P P +PGR
Sbjct: 88 GGGAQSGSCESCCLPGPPGPAGTPGKPGR 116
Score = 22.6 bits (46), Expect(2) = 2.0
Identities = 9/30 (30%), Positives = 13/30 (43%)
Frame = +1
Query: 247 PTDPSRPGRRPCQ*TRXXXXXXXXXXPSGP 336
P +P RP ++PC+ P GP
Sbjct: 126 PGNPGRPPQQPCEPITPPPCKPCPQGPPGP 155
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 25.8 bits (54), Expect(2) = 2.0
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +1
Query: 187 GSGPCSSYIDVCCLAPDQRPPTDPSRPGR 273
G G S + CCL P P +PGR
Sbjct: 88 GGGAQSGSCESCCLPGPPGPAGTPGKPGR 116
Score = 22.6 bits (46), Expect(2) = 2.0
Identities = 9/30 (30%), Positives = 13/30 (43%)
Frame = +1
Query: 247 PTDPSRPGRRPCQ*TRXXXXXXXXXXPSGP 336
P +P RP ++PC+ P GP
Sbjct: 126 PGNPGRPPQQPCEPITPPPWKPCPQGPPGP 155
>Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical
protein Y57G11C.5 protein.
Length = 512
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 326 GNAVRVPPAAALVHWQGLRPGRDGSVGGL 240
G + + PP A+L HW LR G +G G +
Sbjct: 304 GQSQKAPPMASLWHWAHLRVGSEGIRGNV 332
>Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical
protein C10C6.6 protein.
Length = 1178
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 649 SYVVEQFPLLKSLCITISLTVLS*YGIYLLRVLRVPFAG 533
S + + P+ SL + SL L GI+ R+PFAG
Sbjct: 437 SVIPPELPIELSLAVNSSLMALQKLGIFCTEPFRIPFAG 475
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 181 RVGSGPCSSYIDVCCLAPDQRPPTDPSRPGR 273
+VG+G C CCL Q PP P R GR
Sbjct: 80 QVGNGQCEG----CCLPGAQGPPGTPGRAGR 106
>AL023828-22|CAA19467.2| 272|Caenorhabditis elegans Hypothetical
protein Y17G7B.19 protein.
Length = 272
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 127 CNAANNTIITDGTNVIDIRVGSGPCSSYIDVCCLAPDQRP 246
C + ++I + G ++ + GPCS++ID C PD+ P
Sbjct: 101 CYSKKSSICSTGGTPFEVELSDGPCSNHID-C--NPDELP 137
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 25.0 bits (52), Expect(2) = 5.6
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +1
Query: 175 DIRVGSGPCSSY-IDVCCLAPDQRPPTDPSRPGR 273
D V G S+ D CCL P P +PGR
Sbjct: 83 DAGVNGGSASAGGCDACCLPGAAGPAGTPGKPGR 116
Score = 21.8 bits (44), Expect(2) = 5.6
Identities = 9/30 (30%), Positives = 12/30 (40%)
Frame = +1
Query: 247 PTDPSRPGRRPCQ*TRXXXXXXXXXXPSGP 336
P +P RP ++PC P GP
Sbjct: 126 PGNPGRPPQQPCDPITPPPCQPCPQGPPGP 155
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 25.0 bits (52), Expect(2) = 5.6
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +1
Query: 175 DIRVGSGPCSSY-IDVCCLAPDQRPPTDPSRPGR 273
D V G S+ D CCL P P +PGR
Sbjct: 83 DAGVNGGSASAGGCDACCLPGAAGPAGTPGKPGR 116
Score = 21.8 bits (44), Expect(2) = 5.6
Identities = 9/30 (30%), Positives = 12/30 (40%)
Frame = +1
Query: 247 PTDPSRPGRRPCQ*TRXXXXXXXXXXPSGP 336
P +P RP ++PC P GP
Sbjct: 126 PGNPGRPPQQPCDPITPPPCQPCPQGPPGP 155
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 13 protein.
Length = 302
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 64 NDDLSCQTSDGQEGECVNYYLCNAANN-TIITDGTNVIDIRVGSGP-CSSYIDVCCLAPD 237
N+ L+C+ S V++ +AA+N T D G+GP S + CC
Sbjct: 48 NEALTCKGSMKDVWADVHHLRVDAASNRTARAVRYGRDDAAAGNGPNFDSGCEGCCQPGP 107
Query: 238 QRPPTDPSRPGR 273
Q P P +PGR
Sbjct: 108 QGAPGAPGKPGR 119
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein (
C.elegans collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 64 NDDLSCQTSDGQEGECVNYYLCNAANN-TIITDGTNVIDIRVGSGP-CSSYIDVCCLAPD 237
N+ L+C+ S V++ +AA+N T D G+GP S + CC
Sbjct: 48 NEALTCKGSMKDVWADVHHLRVDAASNRTARAVRYGRDDAAAGNGPNFDSGCEGCCQPGP 107
Query: 238 QRPPTDPSRPGR 273
Q P P +PGR
Sbjct: 108 QGAPGAPGKPGR 119
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 23.4 bits (48), Expect(2) = 9.4
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +1
Query: 247 PTDPSRPGRRPCQ*TRXXXXXXXXXXPSGP 336
P +P RP ++PC+ P+GP
Sbjct: 131 PGNPGRPPQQPCEPITPPPCKPCPQGPAGP 160
Score = 22.6 bits (46), Expect(2) = 9.4
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +1
Query: 214 DVCCLAPDQRPPTDPSRPGR 273
+ CCL P P +PGR
Sbjct: 102 EACCLPGAAGPAGTPGKPGR 121
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 24.6 bits (51), Expect(2) = 9.4
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = +1
Query: 187 GSGPCSSYIDVCCLAPDQRPPTDPSRPGR 273
G + D CCL P P +PGR
Sbjct: 88 GGAASAGGCDACCLPGAAGPAGTPGKPGR 116
Score = 21.4 bits (43), Expect(2) = 9.4
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +1
Query: 247 PTDPSRPGRRPCQ 285
P +P RP ++PC+
Sbjct: 126 PGNPGRPPQQPCE 138
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 24.6 bits (51), Expect(2) = 9.4
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = +1
Query: 187 GSGPCSSYIDVCCLAPDQRPPTDPSRPGR 273
G + D CCL P P +PGR
Sbjct: 88 GGSASAGGCDACCLPGAAGPAGTPGKPGR 116
Score = 21.4 bits (43), Expect(2) = 9.4
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +1
Query: 247 PTDPSRPGRRPCQ 285
P +P RP ++PC+
Sbjct: 126 PGNPGRPPQQPCE 138
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 24.6 bits (51), Expect(2) = 9.4
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = +1
Query: 187 GSGPCSSYIDVCCLAPDQRPPTDPSRPGR 273
G + D CCL P P +PGR
Sbjct: 88 GGSASAGGCDACCLPGAAGPAGTPGKPGR 116
Score = 21.4 bits (43), Expect(2) = 9.4
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +1
Query: 247 PTDPSRPGRRPCQ 285
P +P RP ++PC+
Sbjct: 126 PGNPGRPPQQPCE 138
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 24.6 bits (51), Expect(2) = 9.4
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = +1
Query: 187 GSGPCSSYIDVCCLAPDQRPPTDPSRPGR 273
G + D CCL P P +PGR
Sbjct: 88 GGSASAGGCDACCLPGAAGPAGTPGKPGR 116
Score = 21.4 bits (43), Expect(2) = 9.4
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +1
Query: 247 PTDPSRPGRRPCQ 285
P +P RP ++PC+
Sbjct: 126 PGNPGRPPQQPCE 138
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 24.6 bits (51), Expect(2) = 9.4
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = +1
Query: 187 GSGPCSSYIDVCCLAPDQRPPTDPSRPGR 273
G + D CCL P P +PGR
Sbjct: 88 GGSASAGGCDACCLPGAAGPAGTPGKPGR 116
Score = 21.4 bits (43), Expect(2) = 9.4
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +1
Query: 247 PTDPSRPGRRPCQ 285
P +P RP ++PC+
Sbjct: 126 PGNPGRPPQQPCE 138
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,651,262
Number of Sequences: 27780
Number of extensions: 388937
Number of successful extensions: 1477
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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