Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0309.Seq
         (748 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55AC1 Cluster: PREDICTED: similar to CG10144-PA...    39   0.11 
UniRef50_UPI00015B553A Cluster: PREDICTED: similar to Vps8 prote...    36   0.80 
UniRef50_UPI00006CB5AF Cluster: Leucine Rich Repeat family prote...    34   3.2  
UniRef50_UPI0000519A3C Cluster: PREDICTED: similar to CG10144-PA...    34   4.3  
UniRef50_UPI0000EBDDB8 Cluster: PREDICTED: similar to Ig-beta,; ...    33   7.5  
UniRef50_UPI0000D56B8A Cluster: PREDICTED: similar to CG17086-PA...    33   9.9  

>UniRef50_UPI0000D55AC1 Cluster: PREDICTED: similar to CG10144-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG10144-PA - Tribolium castaneum
          Length = 1170

 Score = 39.1 bits (87), Expect = 0.11
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
 Frame = +2

Query: 371 LDIEELDEIEYALPAIDAPTLAEVLCVSEEEEIKNVQDKEEPVS-CSHYRLIFYKQSPNN 547
           LDI EL+++E+ +P++ AP+L  VL   E EE  +        S  S +R +   +    
Sbjct: 18  LDIRELNDLEFDIPSVAAPSLESVLWDMESEEGSDSASLHSFQSLTSKFRSMLCHRILQG 77

Query: 548 LYKH--RRGLQQDLLLS*VLGTEGK-LTVGTAHGHLHSF-YEQTLRWVC-DPNTDVGGS 709
           +       G +    L  V+    K + +GT+HG++ +F  EQ L W C D N+   G+
Sbjct: 78  VSTQVASAGERVGAGLPTVITNSLKYVAIGTSHGYVLNFDSEQNLCWCCYDTNSSDQGA 136


>UniRef50_UPI00015B553A Cluster: PREDICTED: similar to Vps8 protein;
           n=1; Nasonia vitripennis|Rep: PREDICTED: similar to Vps8
           protein - Nasonia vitripennis
          Length = 1208

 Score = 36.3 bits (80), Expect = 0.80
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 371 LDIEELDEIEYALPAID-APTLAEVLCVSEEEEIKNVQD 484
           LDIEELD+ EYA+PA+D  P+L  +L   +   +    D
Sbjct: 26  LDIEELDDAEYAIPAVDKLPSLESILAEPDCGSLSGTDD 64


>UniRef50_UPI00006CB5AF Cluster: Leucine Rich Repeat family protein;
           n=1; Tetrahymena thermophila SB210|Rep: Leucine Rich
           Repeat family protein - Tetrahymena thermophila SB210
          Length = 2323

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +2

Query: 437 EVLCVSEEEEIKNVQDKEEPVSCSHYRLIFYKQS-PNNLYKHRRGLQQD 580
           E+ C++EEEE  N++D  +  +    + +FY+Q+  +NL+K +    QD
Sbjct: 629 EIQCINEEEEEANLRDGNQKQNDIFQQKLFYEQAFESNLFKKKINQSQD 677


>UniRef50_UPI0000519A3C Cluster: PREDICTED: similar to CG10144-PA;
           n=1; Apis mellifera|Rep: PREDICTED: similar to
           CG10144-PA - Apis mellifera
          Length = 1184

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 371 LDIEELDEIEYALPAI-DAPTLAEVLCVSEEEEIKNVQD 484
           LDIEELD  EYA+PA+ + P+L  +L   +   +    D
Sbjct: 23  LDIEELDNTEYAIPAVEELPSLESILTEPDCASLSGTDD 61


>UniRef50_UPI0000EBDDB8 Cluster: PREDICTED: similar to Ig-beta,;
           n=1; Bos taurus|Rep: PREDICTED: similar to Ig-beta, -
           Bos taurus
          Length = 245

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
 Frame = +2

Query: 599 LGTEGKLTVGTAHGHLHSFYEQTLRWV--CDPNT------DVGGS 709
           L T+G+ ++   HGHLHS  E  L WV  C P+T      DVGG+
Sbjct: 84  LPTQGQASINCQHGHLHSSQEAGL-WVHSCPPSTPTPSFLDVGGA 127


>UniRef50_UPI0000D56B8A Cluster: PREDICTED: similar to CG17086-PA;
           n=3; Tribolium castaneum|Rep: PREDICTED: similar to
           CG17086-PA - Tribolium castaneum
          Length = 481

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
 Frame = -3

Query: 743 CTTPCL*D*TRNCHQRLYSDHTPI-LKFVHRKNG---DDHELFLQLVFPLCPVL--KTVA 582
           C  P L   + NC   L+   TP   K   R +G   ++ ELF   V+PL P L  +   
Sbjct: 183 CLYPKLSQISHNCVTNLFQTVTPEDFKITLRASGNISENQELFYNYVYPLWPTLIRRDFL 242

Query: 581 NPVEDLSCACISC 543
              ++L C C  C
Sbjct: 243 KENKNLDCCCKRC 255


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 643,908,110
Number of Sequences: 1657284
Number of extensions: 11597964
Number of successful extensions: 25920
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25907
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)