Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0309.Seq
         (748 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.1  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    24   1.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.5  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +2

Query: 470 KNVQDKEEPVSCSHYRLIFYKQSPNNLYKHRRGLQQDLLLS*VLGTEGKLTVGTAHGHLH 649
           +NV D+EE  S  HY  +  ++S   L    R +  +L  + V+ T G+ T    + + +
Sbjct: 124 QNVLDEEEKSSTKHYAALLTERSSLVLRNDFRLMSNNLNKNNVVAT-GRFTFHKKNLY-Y 181

Query: 650 SFY 658
           SFY
Sbjct: 182 SFY 184


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 641 DHELFLQLVFPLCPVLKTVANPVEDLSCA 555
           ++E  L L+F  CP++ T    ++  +CA
Sbjct: 150 ENEPILYLIFSYCPIVTTGIIKIQFATCA 178


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 371 LDIEELDEIEYALPAIDAPTLAEVLCVSEEEEIKNVQDKEEPVSCSHYRLIF 526
           ++ EE DE E +        + +     EE +  N  +KEE  SC +  + F
Sbjct: 430 VESEEEDE-ETSTTVFSNVEVVQEEAKKEESDSNNNNNKEEGNSCQYCNIAF 480


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,664
Number of Sequences: 336
Number of extensions: 3166
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)