Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0309.Seq
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    27   3.8  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    26   6.6  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   6.6  

>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +2

Query: 386 LDEIEYALPAIDAPTLAEVLCVSEEEEIKNVQDKEEPVSCSHYRLIFYKQSPNNLYKHRR 565
           L++ + A   I +P+       S        Q+KE+  S  H  L +Y+QSP+ +  + R
Sbjct: 309 LNDYQAAQSNISSPSSRFPTPYSPSVPFGTYQEKEKSYSQDHAELSYYQQSPSMMPPYDR 368


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 401 YALPAIDAPTLAEVLCVSEEEEIKNVQDKE-EPVSCSHYRLIFY 529
           + +P +    LA +  + EE E+K+++DK    +S    R I +
Sbjct: 373 FTIPKLTETRLAAISSILEEFELKDIKDKPLSSISVGMQRFILF 416


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -3

Query: 710 NCHQRLY-SDHTPILKFVHRKNGDDHELFLQLVFPLCPVLKTVANPVEDLSCACISCWET 534
           N H   + SD+T  L    +KN  D  + L  +  +  +L  V++     S A     ET
Sbjct: 75  NLHSETFPSDYTSFLNQSPKKNDFDDNMSLNSIVTMGSILSNVSSVWSIFSTAPSEASET 134

Query: 533 ACKKSICSV 507
             K+ I ++
Sbjct: 135 RNKQRILAI 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,584
Number of Sequences: 5004
Number of extensions: 52384
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)