Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0309.Seq
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0033 + 27820563-27823482,27823593-27823996                       30   2.2  
01_06_1774 + 39803747-39803825,39805338-39805555,39805856-398064...    29   3.0  
01_06_1237 + 35630146-35630642,35632617-35632950,35633583-35633909     29   3.0  
02_02_0143 + 7144112-7144252,7144370-7144447,7144921-7145028,714...    29   3.9  

>11_08_0033 + 27820563-27823482,27823593-27823996
          Length = 1107

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 395 IEYALPAIDAPTLAEVLCVSEEEEIKNVQDKEEPVSCSHYRLIFYKQ 535
           +++ LPAI     A  +C+      K ++ K +    +HYRL+ Y +
Sbjct: 750 LKFVLPAIIVAVAAVAICLCRMTR-KKIERKPDIAGATHYRLVSYHE 795


>01_06_1774 +
           39803747-39803825,39805338-39805555,39805856-39806436,
           39807239-39808136
          Length = 591

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 608 EGKLTVGTAHGHLHSFYEQTLRWVCDPNTDVGGSFLFNPTNKG 736
           EG +  G A   + SF ++ L+  C  + +  G  L+NP +KG
Sbjct: 238 EGSIFAGIAQVLVASFKKRNLKLPCPHDINQQGLMLYNPPSKG 280


>01_06_1237 + 35630146-35630642,35632617-35632950,35633583-35633909
          Length = 385

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -2

Query: 330 ND*TDGVFSRSILKTEHYKITNHSMIMNNSELRVSLRLWY 211
           N  TD V    IL    YK   H +I+N  E R+SL L+Y
Sbjct: 289 NSWTDDV---QILSNSMYKSVEHRVIVNAEEERISLALFY 325


>02_02_0143 +
           7144112-7144252,7144370-7144447,7144921-7145028,
           7146170-7146232,7146313-7146474,7146901-7147014,
           7147093-7147155,7147268-7147600,7147679-7147843,
           7147992-7148597
          Length = 610

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 564 EVFNRICYCLKYWAQR 611
           E+F +   CLKYWAQR
Sbjct: 222 EIFRKTLRCLKYWAQR 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,884,911
Number of Sequences: 37544
Number of extensions: 306160
Number of successful extensions: 605
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)