Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0308.Seq
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   2.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   4.9  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    26   6.4  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.4  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    26   6.4  

>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 426 TVRTQEYLRLHTLGKAMGIPSEVLDPHERRK 518
           ++RT E +R + L  A G  + VL PH  R+
Sbjct: 216 SIRTDEVIRFYELEYAPGSTAAVLSPHNYRR 246


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 389 SGVIVYFFRERAVYSSRISKQFYFQIARSKGPYHSGGVP 273
           + +I+  +RE  +  ++I +  Y Q+   K  YH+   P
Sbjct: 639 NAIIISMYREHLISRTQIQELLYHQVPSEKAGYHTLRAP 677


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 351  YSALAKEVDDYA-GWINNGGMFISRXTVRTQEYLRLHTLGKAMGIPSEVLDPHERR 515
            +S  A EV+     ++NN        ++R ++   +H   K +G+ S   DP  +R
Sbjct: 834  HSDFADEVESLLRNFVNNKASSFRFPSMRREQRAFVHMFAKLLGLESVSFDPEPKR 889


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 300 LRPCDLE-VKLLRDSRTVYSALAKEVDDYAGW 392
           L P  +E ++LLRD +T +     +VD   GW
Sbjct: 586 LEPQTIESIRLLRDQKTPFVVALNKVDRLYGW 617


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 482 PQ*SVGPS*AQKIFPLLDPFSVQNGSLRN 568
           P+ S+ PS A   FP + PFS QN +  N
Sbjct: 8   PKPSISPSIASS-FPTVKPFSSQNSTTSN 35


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 354 CIQFSNLEAILLPNRTVEGTIPFRRCAMSFR 262
           C+Q    EA L   RTV  T+ F R  M ++
Sbjct: 27  CLQVLFHEAFLSEQRTVNNTVTFDRYTMQYQ 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,340
Number of Sequences: 5004
Number of extensions: 60498
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)