Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0308.Seq
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1035 + 33659965-33660155,33660992-33661066,33661634-336616...    29   5.1  
03_05_0884 - 28487013-28487271,28487355-28487516,28487594-284878...    28   6.7  
01_01_0420 + 3175544-3176696,3177035-3178581,3179623-3179688,317...    28   6.7  

>02_05_1035 +
           33659965-33660155,33660992-33661066,33661634-33661670,
           33662415-33662487,33662635-33662801
          Length = 180

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 397 TMEACSYQXARFVHKSIYVFILWVKQWESPVKCW 498
           TM   SYQ   + H +  +++ W K +  P + W
Sbjct: 85  TMHLRSYQQGSWHHPNQGLYVYWAKSFAQPARLW 118


>03_05_0884 -
           28487013-28487271,28487355-28487516,28487594-28487802,
           28488490-28488630,28488876-28489071,28489207-28489379,
           28490095-28490142,28490301-28490378,28490526-28490792,
           28491689-28491842,28491928-28492064,28492459-28492536,
           28493039-28493216,28493589-28493803,28494063-28494422,
           28494497-28494973,28495561-28495665,28495838-28496020,
           28496105-28496263,28496937-28497154,28497737-28497905,
           28498262-28498568,28498699-28498826,28498902-28499060,
           28499194-28499364,28500258-28500376,28500604-28500853,
           28501007-28501759
          Length = 1950

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +1

Query: 475 WESPVKCWTLMSAENLSTVGPIQRSKWLFTQRKTVLSI-RRWLAVRLS 615
           W S      L+S  N  T GP+    W+ T R     I R W+   LS
Sbjct: 814 WNSSCVDLLLISVHNELTSGPVSDPAWVATVRSLYQKIAREWITSALS 861


>01_01_0420 + 3175544-3176696,3177035-3178581,3179623-3179688,
            3179892-3179999
          Length = 957

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +1

Query: 607  RLSRLLRRTVQXFTKTVRLLTFIIRTTCFGNKGSNR----GTQRDPR 735
            +L  L  +T + F K + +      T CF    SNR    GT++DPR
Sbjct: 908  QLGALSSKTFEVFFKLINISISEDETVCFNRIKSNRKAICGTEKDPR 954


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,893,879
Number of Sequences: 37544
Number of extensions: 401853
Number of successful extensions: 1004
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)