Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0308.Seq
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)             131   7e-31
SB_32154| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_32366| Best HMM Match : Kinesin (HMM E-Value=0)                     29   3.9  
SB_7589| Best HMM Match : Ras (HMM E-Value=0)                          29   3.9  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      29   5.2  
SB_3795| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.2  
SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)           28   6.9  
SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  

>SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score =  131 bits (316), Expect = 7e-31
 Identities = 64/139 (46%), Positives = 84/139 (60%)
 Frame = +3

Query: 255 LTSGTTWHTAGMVWSLRPCDLEVKLLRDSRTVYSALAKEVDDYAGWINNGGMFISRXTVR 434
           LTSGTTWH+AG++W LRP D EV+++  +R +  +L +E     GWI NGG+FI+    R
Sbjct: 143 LTSGTTWHSAGLLWRLRPSDQEVEIIGHTRDLAKSLEEETGVSPGWIENGGLFIANNKER 202

Query: 435 TQEYLRLHTLGKAMGIPSEVLDPHERRKSFHCWTHSAFKMALYATEDGTIDPAMACSALV 614
             EY RL TLG   GI S VLDP   ++ +           LY+  DGTIDPA   SAL 
Sbjct: 203 LDEYKRLMTLGHCYGIDSHVLDPKATKELYPLMNVKDLYGTLYSPGDGTIDPAGWASALT 262

Query: 615 KVAKKNGAXVYEDCPVVDV 671
           + A K GA V+E+CPV  +
Sbjct: 263 RGATKRGAKVFENCPVTGI 281


>SB_32154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 596 HRRIDSTVFRCVKSHFER*MGPTVERFSALMRVQHFTGDSHCF 468
           H  +DS +FRCV S  +R   P  E F   ++   F  DS  +
Sbjct: 100 HSEMDSEMFRCVSSTRKRNFRPYPEIFENALQSGFFLSDSKTY 142


>SB_32366| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1492

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 462  LGKAMGIPSEVLDPHERRKSFHCWTHSAFKMALYATED 575
            LGK + I   ++  H R   FH W ++ ++  +YA  D
Sbjct: 1156 LGKELSINDGIIGTHTR---FHAWNYTHYRKIIYADPD 1190


>SB_7589| Best HMM Match : Ras (HMM E-Value=0)
          Length = 640

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 28  VPKKMFKVIRDGSVRVRASNFLKRSNTIRFSSGAGS 135
           VP++MFK++  G   V  S+F+ R    RF S   S
Sbjct: 438 VPERMFKIVLAGDAAVGKSSFILRLCRNRFHSALNS 473


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 732  RVPLCTPVTSLISEAGCANNERQQPDS 652
            R P  TP TSL+   G  N  R++P+S
Sbjct: 1343 RTPAQTPSTSLLQFGGAMNESRRKPES 1369


>SB_3795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 554 GSLRNGRRYYRSGDGLQCACQGC 622
           G++ N  + Y SG GLQ +CQ C
Sbjct: 118 GNVLNRSKQYGSGQGLQKSCQNC 140


>SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)
          Length = 1873

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 526  TVGPIQRSKWLF-TQRKTVLSIRRWLAVRLSRLLRRTVQXF 645
            TVGP+ RS W F   +K  L++ RW   R+   ++ + + F
Sbjct: 1091 TVGPL-RSAWPFDVYKKVTLAVNRWNQARMPTYVKLSQRYF 1130


>SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 526 TVGPIQRSKWLF-TQRKTVLSIRRWLAVRLSRLLRRTVQXF 645
           TVGP+ RS W F   +K  L++ RW   R+   ++ + + F
Sbjct: 850 TVGPL-RSAWPFDVYKKVTLAVNRWNQARMPTYVKLSQRYF 889


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,085,742
Number of Sequences: 59808
Number of extensions: 459540
Number of successful extensions: 1167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)