Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0308.Seq
(739 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-18|AAK27867.2| 830|Caenorhabditis elegans Hypothetical... 45 5e-05
AC087079-17|AAT81177.1| 837|Caenorhabditis elegans Hypothetical... 45 5e-05
AL032631-7|CAB63337.2| 855|Caenorhabditis elegans Hypothetical ... 44 9e-05
Z82093-6|CAB05014.1| 256|Caenorhabditis elegans Hypothetical pr... 29 2.6
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 28 6.0
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 28 6.0
AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical... 28 6.0
U41746-5|AAT81186.1| 492|Caenorhabditis elegans Innexin protein... 28 7.9
U41746-4|AAA83332.1| 559|Caenorhabditis elegans Innexin protein... 28 7.9
>AC087079-18|AAK27867.2| 830|Caenorhabditis elegans Hypothetical
protein Y37E3.17a protein.
Length = 830
Score = 45.2 bits (102), Expect = 5e-05
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 3/142 (2%)
Frame = +3
Query: 261 SGTTWHTAGMVWSLRPCDLEVKLLRDSRTVYSALAKEVDDYAGWINNGGMFISRXTVRTQ 440
SGT++H+ G+V + P +L S +YS L E + G + ++ R
Sbjct: 67 SGTSFHSPGLVSASHPAHRYKPILAHSIELYSKLEAETGVNIDFQPTGTIRLATNETRLA 126
Query: 441 E---YLRLHTLGKAMGIPSEVLDPHERRKSFHCWTHSAFKMALYATEDGTIDPAMACSAL 611
E Y+ + + +L P + R+ HS AL+ T DGTI AL
Sbjct: 127 EFRKYVNRDYYKEGDVCKTTLLTPDQVRELAPDVDHSKILGALHTTNDGTISARALTQAL 186
Query: 612 VKVAKKNGAXVYEDCPVVDVHY 677
V AK GA V + ++ Y
Sbjct: 187 VVGAKNGGAQVIDGAIPKEIKY 208
>AC087079-17|AAT81177.1| 837|Caenorhabditis elegans Hypothetical
protein Y37E3.17b protein.
Length = 837
Score = 45.2 bits (102), Expect = 5e-05
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 3/142 (2%)
Frame = +3
Query: 261 SGTTWHTAGMVWSLRPCDLEVKLLRDSRTVYSALAKEVDDYAGWINNGGMFISRXTVRTQ 440
SGT++H+ G+V + P +L S +YS L E + G + ++ R
Sbjct: 74 SGTSFHSPGLVSASHPAHRYKPILAHSIELYSKLEAETGVNIDFQPTGTIRLATNETRLA 133
Query: 441 E---YLRLHTLGKAMGIPSEVLDPHERRKSFHCWTHSAFKMALYATEDGTIDPAMACSAL 611
E Y+ + + +L P + R+ HS AL+ T DGTI AL
Sbjct: 134 EFRKYVNRDYYKEGDVCKTTLLTPDQVRELAPDVDHSKILGALHTTNDGTISARALTQAL 193
Query: 612 VKVAKKNGAXVYEDCPVVDVHY 677
V AK GA V + ++ Y
Sbjct: 194 VVGAKNGGAQVIDGAIPKEIKY 215
>AL032631-7|CAB63337.2| 855|Caenorhabditis elegans Hypothetical
protein Y106G6H.5 protein.
Length = 855
Score = 44.4 bits (100), Expect = 9e-05
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +3
Query: 549 KMALYATEDGTIDPAMACSALVKVAKKNGAXVYEDCPVVDVH 674
++AL++ ED +DP C L +AK GA +YE PV++VH
Sbjct: 155 QLALFSPEDVALDPVALCQHLALIAKDYGALIYESNPVLEVH 196
>Z82093-6|CAB05014.1| 256|Caenorhabditis elegans Hypothetical
protein ZK39.7 protein.
Length = 256
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +3
Query: 231 CGFIRKS*LTSGTTWHTAGMVWSLRPCDLEVKLLRDSRTVYSALAKEVDDYAGWINN 401
CG + T G+T TAG+VW+ D + + + ++ A + D W N
Sbjct: 140 CGSLNSFQWTDGSTTGTAGLVWNTNQPDNKDSRSQQCLVLLASRASSIQDKWTWYAN 196
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = -3
Query: 605 TASHRRIDSTVFRCVKSHFER*MGPTVERFSALMRVQHFTGDSHCFTQSMKT*ILLCTNR 426
+ S+R + F+ V S E+ GP + S + R+ G+ H TQS T ++LC
Sbjct: 1793 STSNRHLAGRCFQIV-SALEQPPGPWIP--SLMSRLVETAGEQHDETQSYVTDLMLCLTD 1849
Query: 425 AS*YEHASIV 396
S Y +I+
Sbjct: 1850 CSPYISPTIM 1859
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = -3
Query: 605 TASHRRIDSTVFRCVKSHFER*MGPTVERFSALMRVQHFTGDSHCFTQSMKT*ILLCTNR 426
+ S+R + F+ V S E+ GP + S + R+ G+ H TQS T ++LC
Sbjct: 1821 STSNRHLAGRCFQIV-SALEQPPGPWIP--SLMSRLVETAGEQHDETQSYVTDLMLCLTD 1877
Query: 425 AS*YEHASIV 396
S Y +I+
Sbjct: 1878 CSPYISPTIM 1887
>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
protein F53G12.3 protein.
Length = 1503
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 315 LEVKLLRDSRTVYSALAKEVDD--YAGWINN 401
LE+K+ T++SAL +E + Y GW NN
Sbjct: 17 LEIKVQFSKETLFSALQQEAETQRYDGWYNN 47
>U41746-5|AAT81186.1| 492|Caenorhabditis elegans Innexin protein
10, isoform b protein.
Length = 492
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 255 LTSGTTWHTAGMVWSLRPCDLEVKLL 332
L +GTTW +GM + CD +V+++
Sbjct: 237 LLNGTTWEQSGMFPRVSLCDFDVRVM 262
>U41746-4|AAA83332.1| 559|Caenorhabditis elegans Innexin protein
10, isoform a protein.
Length = 559
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 255 LTSGTTWHTAGMVWSLRPCDLEVKLL 332
L +GTTW +GM + CD +V+++
Sbjct: 237 LLNGTTWEQSGMFPRVSLCDFDVRVM 262
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,882,092
Number of Sequences: 27780
Number of extensions: 343802
Number of successful extensions: 798
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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