Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0308.Seq
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   4.0  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
 Frame = +3

Query: 513 RKSFHCWTHSAFKMALYATEDGTI--DPA 593
           +  +  W H     A Y   DGTI  DPA
Sbjct: 180 KHDYRVWNHQLISYAGYKNPDGTIIGDPA 208


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 735 PRVPLCTPVTSLISEAGCANNERQQPD 655
           P  P  T V  L+  A    NER+ PD
Sbjct: 159 PVTPTPTTVQQLLRRAQIRRNERRTPD 185


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 435 TQEYLRLHTLGKAMGIPSEVLDPHER 512
           +Q YL +H+    + IPS  +D  ++
Sbjct: 377 SQNYLTVHSFPSTLNIPSVKIDEDQK 402


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +3

Query: 456 HTLGKAMGIPSEVLDPHERRKSFHCWTHSAFKMALYATEDG 578
           H    A    S   D H  R +F  W HS  ++ ++  + G
Sbjct: 165 HVAKCATDFSSWPYDTHRCRINFGSWVHSGEEVNIFLDKKG 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,031
Number of Sequences: 438
Number of extensions: 4537
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)