Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0308.Seq
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01680.1 68414.m00086 U-box domain-containing protein               29   4.3  
At5g52600.1 68418.m06531 myb family transcription factor (MYB82)...    28   7.4  
At2g32680.1 68415.m03995 disease resistance family protein conta...    28   7.4  
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01...    28   7.4  
At1g55610.1 68414.m06365 protein kinase family protein contains ...    27   9.8  

>At1g01680.1 68414.m00086 U-box domain-containing protein
          Length = 308

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = +3

Query: 309 CDLEVKLLRDSRTVYSALAKEVDDYAGWINNGGMFISRXTVRTQEYLRLHTL 464
           C + ++++RD          E +++  W+ +GG    R + +T + L  H L
Sbjct: 239 CPISMEIMRDPHVAADGFTYEAEEFRKWLRSGG----RTSPKTNKPLENHNL 286


>At5g52600.1 68418.m06531 myb family transcription factor (MYB82)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to  cDNA putative transcription factor
           (MYB82) mRNA, partial cds GI:3941515
          Length = 201

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 507 HEGPTLHWGFPL-LYPKYEDVNTLVYEPC 424
           H G  +H G PL L   Y D NTLV++PC
Sbjct: 164 HFGYDVHVGSPLPLISHYPD-NTLVFDPC 191


>At2g32680.1 68415.m03995 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 890

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -2

Query: 339 NLEAILLPNRTVEGTIPFRRC-AMSFRLLISSF**NRIHASL-R*LVERVTARYASPDNN 166
           NLE + L N  +EG+IP   C   S R L  S   NR+   L R  V   + ++ S  NN
Sbjct: 529 NLELVYLRNNNLEGSIPDALCDGASLRTLDVSH--NRLTGKLPRSFVNCSSLKFLSVINN 586

Query: 165 NI 160
            I
Sbjct: 587 RI 588


>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
           TIGR01612: reticulocyte binding protein; contains
           TIGRFAM TIGR00864: polycystin cation channel protein;
           similar to fimbriae-associated protein Fap1
           [Streptococcus parasanguinis] (GI:3929312)
          Length = 1498

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 570 EDGTIDPAMACSALVKVAKKNGAXVYEDCPVVDV 671
           EDG ID  + C + V V K     V ED P  +V
Sbjct: 650 EDGEIDREVNCGSEVNVTKTTPVAVREDIPPKEV 683


>At1g55610.1 68414.m06365 protein kinase family protein contains
           Prosite:PS00107: Protein kinases ATP-binding region
           signature
          Length = 1166

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 354 CIQFSNLEAILLPNRTVEGTIP--FRRCAMSFRLLISS 247
           C++  NLE ++L N  + G+IP    RC     + +SS
Sbjct: 471 CVKGGNLETLILNNNLLTGSIPESISRCTNMIWISLSS 508


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,862,820
Number of Sequences: 28952
Number of extensions: 317241
Number of successful extensions: 778
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)