Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0306.Seq
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    28   0.66 
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    27   2.0  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   6.2  

>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = -2

Query: 350 PGHAVTRGLNRPRQCQSLAVFTVVDVEQDVIVYLAGCRYHWALKLSTLLTPKAIWSPFQL 171
           PG ++  G   P QC++L +     +     + +AG   H  L +   L  K I S  +L
Sbjct: 333 PGSSIMPGKVNPTQCEALTMVCAQVMGNHATITVAGASGHCELNVFKPLLAKNILSSIRL 392

Query: 170 V 168
           +
Sbjct: 393 L 393


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 315 RTVEPSGHRMAWGYNGRVIGSPEHYAWGIKAF 410
           +T+ P G    +GY   +   P HY + I  F
Sbjct: 2   KTLSPEGSLWVFGYGSLIWHPPPHYDYSIPCF 33


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 266  LVLHLQP*IQQGFDTVEDG 322
            +V HL   I+Q +D +EDG
Sbjct: 1020 IVFHLMQRIKQSYDVIEDG 1038


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,848,156
Number of Sequences: 5004
Number of extensions: 36826
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)