Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0306.Seq
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0622 - 4625246-4627759                                           29   2.0  
06_03_1412 + 29993566-29993873,29993960-29994583,29994665-299948...    27   6.2  
06_03_0306 - 19396423-19397112,19397645-19397916,19398047-19398215     27   6.2  
01_01_0778 + 6024154-6024315,6024725-6024802,6024909-6025071,602...    27   6.2  
11_06_0481 + 24092574-24093962                                         23   7.1  
07_03_1620 - 28180020-28180862                                         27   8.2  
05_01_0472 + 3772633-3773145                                           27   8.2  

>07_01_0622 - 4625246-4627759
          Length = 837

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 373 PITLPLYPQAMR*PEGSTVLDSVKALLY 290
           P+TLPLYPQ+M   + ST  D  +A L+
Sbjct: 398 PVTLPLYPQSME--DASTQSDCEEACLH 423


>06_03_1412 +
           29993566-29993873,29993960-29994583,29994665-29994800,
           29995108-29995196,29995299-29995413,29995565-29995628,
           29995711-29995782,29995906-29996153
          Length = 551

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 309 LSRTVEPSGHR-MAWGYNGRVIGSPEHYA 392
           + R  E  GH  ++W     VIGSPE+Y+
Sbjct: 39  VQRWAEERGHAGVSWPAGAEVIGSPEYYS 67


>06_03_0306 - 19396423-19397112,19397645-19397916,19398047-19398215
          Length = 376

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -2

Query: 464 FIAAHSHWFVVETL---YYNLESLYTPSVMFGTSDYSAVVSPGH 342
           F  A + W +++ L   + NL+ L+   V+ G S  +A+ +P H
Sbjct: 294 FATAATDWSILDKLLASHQNLDQLFQGRVIAGASSPAAMAAPSH 337


>01_01_0778 +
           6024154-6024315,6024725-6024802,6024909-6025071,
           6025484-6025788,6025897-6025961,6026570-6026763,
           6027233-6027441,6028147-6028325,6029345-6029459,
           6029520-6029558
          Length = 502

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 25/87 (28%), Positives = 32/87 (36%)
 Frame = -1

Query: 351 PRPCGDPRAQPSSTVSKPCCIHGCRCRTRRHCLLSRLQVPLGSETIDAVDSEGHMVAVPV 172
           P P   PR  PSS   +   +   + R       SR  V   +   D  +  G    V  
Sbjct: 33  PPPQPQPRVLPSSVACRSSALRDFQFRNISTRPTSRRDVLPVASAFD--EDLGDFSLVHA 90

Query: 171 SADSQYQVVVTFSVQDLEVDLVVLPPT 91
             D   +VVV  S  D   + VVL PT
Sbjct: 91  DGDDPLEVVVYSSESDWSDEEVVLNPT 117


>11_06_0481 + 24092574-24093962
          Length = 462

 Score = 23.4 bits (48), Expect(2) = 7.1
 Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = -1

Query: 360 RCIP-RPCGDPRAQPSST 310
           RC P RPC  P A PSS+
Sbjct: 23  RCNPWRPCWTPVAAPSSS 40



 Score = 22.2 bits (45), Expect(2) = 7.1
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = -1

Query: 318 SSTVSKPCCIHGCRCRTRRHCLLSRLQVPLGSETIDAVD-SEGHMVAVP 175
           SST S     HG RC  R +     L  P+    +  VD    H+ A P
Sbjct: 58  SSTSSSSTPPHGRRCHRRGYYTGVALPAPVRGIFVSYVDYDRTHLFAHP 106


>07_03_1620 - 28180020-28180862
          Length = 280

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 342 CGDPRAQPSSTVSKPCCIHGCRCR 271
           C D R + ++  + P C HG RCR
Sbjct: 94  CPDYRPREAAPGAVPSCAHGLRCR 117


>05_01_0472 + 3772633-3773145
          Length = 170

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 327 AQPSSTVSKPCCIHGCRCRTRRHCLL 250
           A P+  +SKPCC  G     RR  L+
Sbjct: 45  ANPNHVLSKPCCSQGGAVAVRRTILI 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,216,354
Number of Sequences: 37544
Number of extensions: 253357
Number of successful extensions: 677
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)