Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0306.Seq
         (492 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55241| Best HMM Match : PH (HMM E-Value=6.1e-12)                    29   2.8  
SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)     27   6.4  
SB_42888| Best HMM Match : EGF (HMM E-Value=8.4e-20)                   27   8.4  
SB_14336| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.22)              27   8.4  

>SB_55241| Best HMM Match : PH (HMM E-Value=6.1e-12)
          Length = 734

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 382 SGLPITLPLYPQAMR*PEGSTVLDSVKALLYSRL*M*NKTSLS 254
           SGLP++LP+ P+A    +G  V +S+  ++ S      KTS S
Sbjct: 88  SGLPVSLPIAPEASG-DDGKEVFESLMEIVSSNCKESQKTSAS 129


>SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)
          Length = 2022

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 258 CLLSRLQVPLG--SETIDAVDSEGHMVA 181
           C+LSRL+ PLG   ET  A++   H  A
Sbjct: 146 CILSRLRTPLGRAQETFQAIEGTLHQYA 173


>SB_42888| Best HMM Match : EGF (HMM E-Value=8.4e-20)
          Length = 167

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 363 CRCIPRPCGDPRAQPSSTVSKPCCIHGCR 277
           CRC P   G    +PS  V   C  H C+
Sbjct: 72  CRCAPGYTGKNCTEPSPIVEPHCLPHPCK 100


>SB_14336| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.22)
          Length = 774

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +1

Query: 88  MGRWEDNKVYFKILNTERNHYLVLGIGTNWNGD---HMAFGVNSVDSFRAQWYLQPAK 252
           +G +E NKV     + +R     L +G  +NG+   + A+G+      + + +  P +
Sbjct: 601 LGSYEINKVSLSCFDDKRGEETTLSVGVYYNGEEHPYAAYGMQIYKDPKGEMHSNPGR 658


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,946,656
Number of Sequences: 59808
Number of extensions: 300987
Number of successful extensions: 1009
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)