Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0306.Seq
         (492 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50950.2 68418.m06319 fumarate hydratase, putative / fumarase...    27   5.2  
At5g50950.1 68418.m06318 fumarate hydratase, putative / fumarase...    27   5.2  
At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identica...    27   6.9  
At2g23240.2 68415.m02776 plant EC metallothionein-like family 15...    27   6.9  
At2g23240.1 68415.m02775 plant EC metallothionein-like family 15...    27   6.9  
At2g47510.1 68415.m05930 fumarate hydratase, putative / fumarase...    27   9.1  

>At5g50950.2 68418.m06319 fumarate hydratase, putative / fumarase,
           putative similar to SP|P55250 Fumarate hydratase,
           mitochondrial precursor (EC 4.2.1.2) (Fumarase)
           {Rhizopus oryzae}; contains Pfam profile PF00206: Lyase
          Length = 499

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = -2

Query: 350 PGHAVTRGLNRPRQCQSLAVFTVVDVEQDVIVYLAGCRYHWALKLSTLLTPKAIWSPFQL 171
           PG ++  G   P QC++L +     +   V V + G   H+ L +   +   A+    +L
Sbjct: 351 PGSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTIGGSNGHFELNVFKPVIASALLHSIRL 410

Query: 170 V 168
           +
Sbjct: 411 I 411


>At5g50950.1 68418.m06318 fumarate hydratase, putative / fumarase,
           putative similar to SP|P55250 Fumarate hydratase,
           mitochondrial precursor (EC 4.2.1.2) (Fumarase)
           {Rhizopus oryzae}; contains Pfam profile PF00206: Lyase
          Length = 510

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = -2

Query: 350 PGHAVTRGLNRPRQCQSLAVFTVVDVEQDVIVYLAGCRYHWALKLSTLLTPKAIWSPFQL 171
           PG ++  G   P QC++L +     +   V V + G   H+ L +   +   A+    +L
Sbjct: 351 PGSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTIGGSNGHFELNVFKPVIASALLHSIRL 410

Query: 170 V 168
           +
Sbjct: 411 I 411


>At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identical
           to Anthocyaninless2 [Arabidopsis thaliana] GI:5702094
          Length = 802

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = +1

Query: 121 KILNTERNHY----LVLGIGTNWNGDHMAF 198
           K L    NH+    L L +GTN NG H AF
Sbjct: 263 KFLGHHHNHHYNSSLELAVGTNNNGGHFAF 292


>At2g23240.2 68415.m02776 plant EC metallothionein-like family 15
           protein identical to EC protein homolog 2 (SP:Q42377)
           {Arabidopsis thaliana}; identical to an EST:
           GB:X92116:ATECPRHOM; contains a vertebrate
           metallothionein signature (PS00203); contains Pfam
           profile PF02068: Plant PEC family metallothionein
          Length = 84

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 363 CRCIPRPCGDPRAQPSSTVSKPCCIHGCRCRT 268
           C C   PC  P+ Q  ++     C  GC C T
Sbjct: 52  CGC--NPCNCPKTQTQTSAKGCTCGEGCTCAT 81


>At2g23240.1 68415.m02775 plant EC metallothionein-like family 15
           protein identical to EC protein homolog 2 (SP:Q42377)
           {Arabidopsis thaliana}; identical to an EST:
           GB:X92116:ATECPRHOM; contains a vertebrate
           metallothionein signature (PS00203); contains Pfam
           profile PF02068: Plant PEC family metallothionein
          Length = 85

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 363 CRCIPRPCGDPRAQPSSTVSKPCCIHGCRCRT 268
           C C   PC  P+ Q  ++     C  GC C T
Sbjct: 53  CGC--NPCNCPKTQTQTSAKGCTCGEGCTCAT 82


>At2g47510.1 68415.m05930 fumarate hydratase, putative / fumarase,
           putative similar to SP|P55250 Fumarate hydratase,
           mitochondrial precursor (EC 4.2.1.2) (Fumarase)
           {Rhizopus oryzae}; contains Pfam profile PF00206: Lyase
          Length = 492

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = -2

Query: 350 PGHAVTRGLNRPRQCQSLAVFTVVDVEQDVIVYLAGCRYHWALKLSTLLTPKAIWSPFQL 171
           PG ++  G   P QC++L +     +   V V + G   H+ L +   +   A+    +L
Sbjct: 344 PGSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVIASALLHSVRL 403

Query: 170 V 168
           +
Sbjct: 404 I 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,685,715
Number of Sequences: 28952
Number of extensions: 195752
Number of successful extensions: 442
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)