Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0304.Seq
         (668 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.42 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.74 
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   5.2  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.9  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   9.1  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 139  ENPVTKKSLTLLQXSQNEEVSRLSSWARGAC 231
            E P+   +   ++ S N     LS+W+ G C
Sbjct: 1489 EKPIVPSAEKFIEVSSNSITLHLSAWSDGGC 1519


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = -2

Query: 511 VSSWNPRNCD 482
           VS+WNP++CD
Sbjct: 486 VSAWNPKDCD 495


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 405 RSCRTAAACPPRRPQRTSLAGRSSDAS 325
           R C TA++ P R P+R  + G S  AS
Sbjct: 29  RDCTTASSWPGRPPKRAPV-GLSLAAS 54


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 125 TQPVTSYSTGLVPCKCCNINCL 60
           TQP   YST +VP    N N L
Sbjct: 85  TQPARFYSTPIVPHFAYNHNPL 106


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -1

Query: 260 PHAADHALTPHAPRAHDDSRDTSSFWL 180
           P   + A +PH    H +S    S W+
Sbjct: 89  PAGHEEAQSPHRIYMHPESPSKGSHWM 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,362
Number of Sequences: 336
Number of extensions: 2688
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)