Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0304.Seq
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    28   1.1  
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    28   1.4  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   2.4  
SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.6  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    26   5.6  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    26   5.6  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   7.5  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   9.9  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    25   9.9  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.9  

>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
 Frame = +1

Query: 34  YLIKKAPHAR-QFILQHLQGTNPV--------------LYDVTGWVKASRENPVTKKSLT 168
           Y   KAP  R ++ILQ LQG NPV              + DV   + ASR++P  +K L 
Sbjct: 121 YNTLKAPLTRAEYILQ-LQGINPVSEDISNSDPEFLMEIMDVHENISASRDSP--EKLLQ 177

Query: 169 LLQXSQNEEVSRLSSWARGACGVSAWSAA 255
           L Q +Q  +V  ++   R A   S W +A
Sbjct: 178 LSQENQGRKVQEINE-IRKAMESSNWDSA 205


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = +1

Query: 76  QHLQGTNP--VLYDVTGWVKASRENP----VTKKSLTLLQXSQNEEVSRLSSWARGACGV 237
           +H+Q   P  V  + TG VKA R  P    V  + L LLQ +    + R   W + A G+
Sbjct: 200 RHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGL 259


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 518 RLYKQGFPXHMLLSEFARRYRLLATSE 598
           R+   GFP      EFA R+R+L +S+
Sbjct: 676 RISSLGFPARFSYEEFAHRFRILLSSK 702


>SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 435 NRPTDSPDDVNVPLLRSQFRGFQLLTRRGFT 527
           N  ++SPDD+         RGF  L   GFT
Sbjct: 116 NSNSESPDDLQNAQTGETLRGFDRLREAGFT 146


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = +1

Query: 76  QHLQGTNP--VLYDVTGWVKASRENP----VTKKSLTLLQXSQNEEVSRLSSWARGACGV 237
           +H+Q   P  V  +  G VKA R  P    V  + L LLQ +    + R   W + A G+
Sbjct: 200 RHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGL 259


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +1

Query: 4   THYGPPNQMQYLIKKAPHARQFILQHLQGTNPVLYDVTGWVKASRENPVTK--KSLTLLQ 177
           + YG  +Q + L   +  ARQ + QHL    P   +  G + A   +P+T+  KS  +L+
Sbjct: 635 SEYGNKSQFKRLRSTSTPARQDLAQHLL---PPKTNTEGLMHAQSVSPITQAMKSANVLE 691

Query: 178 XS 183
            S
Sbjct: 692 GS 693


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 518 RLYKQGFPXHMLLSEFARRYRLLATS 595
           R+ + GFP  +  +EF  RY +L+ S
Sbjct: 694 RIAQTGFPNKLFYTEFRARYGILSQS 719


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +2

Query: 350  SEVRCGRRGGHAAAVRHERSHVRVLSAREPTDRLAR*RQRAAPTIAVPRIPTADAS 517
            S V   RRG +  +V  E   + V+   +PT R      R APT +  R  T D S
Sbjct: 1183 SAVHLVRRGEYLLSVVREHPDLFVVKTDQPTKRK---YNRKAPTKSSTRQTTLDGS 1235


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = -2

Query: 529 LVKPRRVSSWNPRNCDRRSGTLTSSGESVGRFASRQHTNMTPLVPHRRSVSTTPS 365
           +V+  R+SS+N +N    S + T++  S G FAS    N++ L     ++ T PS
Sbjct: 248 IVQFLRISSFNTKNDYSSSRSKTTASSSNGTFASPSF-NISSL-SGSSNIGTAPS 300


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -1

Query: 518 STRQQLESAELRS*ERHVDVIGRVGRSVREQTAHEHDSARAAPPQRVHHAVRNEL--RLQ 345
           S+ +  ++AE    ++H DV+  +  +V  + ++ H +++      +    RN+    + 
Sbjct: 638 SSEKSYKAAERGQQDKHNDVLVDLNPNVEAEKSNPHSNSQKTSKNDMSRNQRNKYAKEIM 697

Query: 344 GGRATLH 324
            G+ TLH
Sbjct: 698 TGQPTLH 704


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,802
Number of Sequences: 5004
Number of extensions: 45074
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)