Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0304.Seq
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0490 + 18036384-18037583 32 0.36
07_01_0139 - 1014952-1015165,1015271-1015350,1015420-1015629,101... 30 1.9
06_03_0363 + 19904002-19905792 29 3.3
04_04_1648 - 35036538-35037155 29 3.3
10_01_0150 + 1747424-1747758,1748097-1748103 29 4.4
11_01_0674 - 5502275-5502954,5503054-5504746 28 5.9
10_08_0798 + 20649370-20649428,20649515-20649719 28 5.9
04_04_0276 + 24091360-24091464,24091580-24091713,24091813-240924... 28 5.9
03_05_0879 - 28447816-28447989,28448933-28449358 28 5.9
01_06_1365 - 36690267-36692222 28 5.9
12_02_0923 - 24392892-24394148 28 7.7
09_06_0199 + 21526872-21527250,21527431-21527594,21527673-215277... 28 7.7
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 28 7.7
03_02_0505 + 8981856-8982879,8983014-8983129,8985407-8985994,898... 28 7.7
>09_04_0490 + 18036384-18037583
Length = 399
Score = 32.3 bits (70), Expect = 0.36
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 449 LAR*RQRAAPTIAVPRIPTADASRLYKQ-GFPXHMLLSEFARRYRLLATSES*DSETNSA 625
LAR R A RIP A+A +LY++ GFP +S A R+ LL DS + A
Sbjct: 82 LARARSFLASLPPPHRIPLAEAGKLYRELGFPRGRSVSRAAARHPLLFHLPRVDSVPHLA 141
Query: 626 ADP 634
P
Sbjct: 142 LTP 144
>07_01_0139 -
1014952-1015165,1015271-1015350,1015420-1015629,
1015925-1016044,1016650-1016709,1017129-1017204,
1018189-1018352,1018428-1018490,1018815-1018902,
1018997-1019647,1019965-1020449
Length = 736
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +1
Query: 373 WWTRCGGAARAESCSCAVCSRTDRPTRPMTSTCRSYDRSSADSNC 507
WW R A + S AV S P R TS+C + R SA C
Sbjct: 4 WWKRSKSAFQRSS---AVSSAPASPARASTSSCAAPGRRSAAGRC 45
>06_03_0363 + 19904002-19905792
Length = 596
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/59 (35%), Positives = 28/59 (47%)
Frame = +1
Query: 214 WARGACGVSAWSAAWGTPLLYGGLLLSDEPLLRVRPA*SVARPPCKRSSLRTAWWTRCG 390
WA GA G++A + P +YG PL+ PA S+A SL TA + R G
Sbjct: 497 WAAGAAGLAACAEKQRAPRVYGA------PLVPWLPAMSIATNLFLMGSLGTAAYARFG 549
>04_04_1648 - 35036538-35037155
Length = 205
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 92 VPCKCCNINCLACGAF 45
V C CC CLACG F
Sbjct: 8 VSCLCCPCKCLACGLF 23
>10_01_0150 + 1747424-1747758,1748097-1748103
Length = 113
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 390 AAACPPRRPQRTSLAGRSSDASCRPY 313
A ACPP P+ T+ + R+ +C P+
Sbjct: 72 AVACPPTSPRLTAASARAPPRTCLPH 97
>11_01_0674 - 5502275-5502954,5503054-5504746
Length = 790
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 94 NPVLYDVTGWVKASRENPVTKKSLTLLQXSQNEEVSRLSSWARGACGVSAWS 249
N + T WV A+RE P+T L L Q +++ S L+ A + WS
Sbjct: 80 NEIPVCTTVWV-ANRERPITDHELNLAQLKFSQDGSSLAIIINRATESTVWS 130
>10_08_0798 + 20649370-20649428,20649515-20649719
Length = 87
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 346 CKRSSLRTAWWTRCGGAARAESCSCAVCSRTDRPTRPMTST 468
C R S T R G + +SC+CA C T T P +T
Sbjct: 48 CGRESQPTGRENRRAGCSCGDSCTCASCGST-TTTAPAATT 87
>04_04_0276 +
24091360-24091464,24091580-24091713,24091813-24092454,
24092858-24093044
Length = 355
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = +1
Query: 340 PPCKRSSLRTAWWTRCGGAARAESCSCAVCSRTDRPTRPMTSTC-RSYDRSSADSNC 507
PPC+ L + CG A C C R + R S C R+ D C
Sbjct: 232 PPCRGLRLLMRHYATCGARKAAPGGGCTRCKRMVQLFRLHASVCDRAAPHDDGDRPC 288
>03_05_0879 - 28447816-28447989,28448933-28449358
Length = 199
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -1
Query: 401 RAAPPQRVHHAVRNELRLQGGRATLHAGR 315
R APP A R +L L G RA LH R
Sbjct: 17 RRAPPASAAAATRLDLPLVGSRAALHVAR 45
>01_06_1365 - 36690267-36692222
Length = 651
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 470 HVDVIGRVGRSVREQTAHEHDSARAAPPQRVHHAV 366
HVDV G R E + SAR +PP RV + +
Sbjct: 566 HVDVNGSSARRREEHVLERNRSARYSPPGRVDNGM 600
>12_02_0923 - 24392892-24394148
Length = 418
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 19 PNQMQYLIKKAPHARQFILQHLQGTNPVLYDVTGWVKASRE 141
PNQ +Y I + + +L++L G+N L V W+ ++
Sbjct: 255 PNQHEYYIDGSTKNKSLVLRYLVGSNGRLLMVRRWMNCRQQ 295
>09_06_0199 +
21526872-21527250,21527431-21527594,21527673-21527736,
21528001-21528134,21528302-21528385,21528526-21528600,
21528683-21528754,21528852-21528925,21529185-21529282,
21529355-21529464,21529794-21529862,21529944-21530018,
21530519-21530611,21530690-21530769,21530877-21530976,
21531150-21531586,21531676-21531706,21532873-21533822,
21533982-21534201
Length = 1102
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 221 RAHDDSRDTSSFWLXCSNVRDFFVTGFSRLAFTQPVTSYST 99
R H T F+ +N+ FFV +L+ T PVTS S+
Sbjct: 532 RFHTSLDKTRRFYPHVNNMDGFFVAKLKKLSNTIPVTSESS 572
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 398 HERSHVRVLSAREPTDRLAR*RQRAAPTI 484
H RSH L EP+D + QRA P I
Sbjct: 408 HNRSHNEFLYEEEPSDNINMVEQRAQPQI 436
>03_02_0505 +
8981856-8982879,8983014-8983129,8985407-8985994,
8986091-8986192
Length = 609
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = -2
Query: 535 TLLVKPRRVSSWNPRNCDRRSGTLTSSGESVGRFASRQHTNMTPLVPHRRSVST 374
T+ RRV+ + CDR S S+ +V FA + N P R ST
Sbjct: 532 TMTEYTRRVAKPGAKECDRPSFLAASTVHTVRVFAPKMSPNEWTRAPRRHCCST 585
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,597,468
Number of Sequences: 37544
Number of extensions: 368803
Number of successful extensions: 1608
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1608
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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