Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0304.Seq
(668 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_9481| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_50929| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_18205| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_19201| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 6.0
SB_22282| Best HMM Match : 7tm_2 (HMM E-Value=9.5e-09) 28 7.9
SB_38235| Best HMM Match : Pox_A32 (HMM E-Value=0.32) 28 7.9
>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2463
Score = 58.4 bits (135), Expect = 5e-09
Identities = 29/76 (38%), Positives = 41/76 (53%)
Frame = +1
Query: 13 GPPNQMQYLIKKAPHARQFILQHLQGTNPVLYDVTGWVKASRENPVTKKSLTLLQXSQNE 192
G NQ + +K+ P F + H QGT PVLY+ GW+K +REN TK++ +L S
Sbjct: 1044 GTLNQKESWVKQGPKKDTFYVNHCQGTLPVLYNAQGWLKLARENATTKQARGILADSTKN 1103
Query: 193 EVSRLSSWARGACGVS 240
V+ L S A +S
Sbjct: 1104 SVNSLFSQRNTADSIS 1119
Score = 25.8 bits (54), Expect(2) = 4.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 536 FPXHMLLSEFARRYRLLATSE 598
FP HM EF RR+ +LA ++
Sbjct: 1703 FPEHMPFGEFRRRFDVLAPAQ 1723
Score = 21.0 bits (42), Expect(2) = 4.6
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 509 DASRLYKQGFPXHM 550
DA R+++QG P H+
Sbjct: 1649 DAVRIHRQGEPGHV 1662
>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1805
Score = 32.3 bits (70), Expect = 0.37
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 518 RLYKQGFPXHMLLSEFARRYRLL 586
R+ +QGFP ML EF +RY LL
Sbjct: 740 RICRQGFPNRMLFQEFKQRYELL 762
>SB_9481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 281 GFFYPTNPYF-GYGRHEASLDRPASEVRCGRRG 376
G +YPT Y Y +SL P S VRC RRG
Sbjct: 216 GLYYPTARYNRDYSPQFSSLSFPVSVVRCFRRG 248
>SB_50929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 149 TGFSRLAFTQPVTSYSTGLVPCKCCNINCLACGAFLMRYCI*F 21
TG+S L+F ++ +P C I C+A F +RY + F
Sbjct: 2 TGYSVLSFHVRFQGAASSSMPLFYCRIRCIATRVFKIRYVLVF 44
>SB_18205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 20 RIRCSTSSRRPRMPDSLYCSIYRELTRCY---TTSP 118
RI STSS R MP LY S+Y +L TT+P
Sbjct: 84 RITRSTSSTRSSMPTDLYPSLYEDLPHAMLLPTTTP 119
>SB_19201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 515 TRQQLESAELRS*ERHVDVIGRVGRSVREQTAH-EHDSARAAPPQRVHHAVRNE 357
T+++L + L S ++H D I R+ + ++T H E+DS A R H +E
Sbjct: 900 TKRELRDSHLLSIDKHSDPIERLRDTHAKETRHFENDSMSHARNSRDRHVNADE 953
>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1120
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -3
Query: 399 CRTAAA--CPPRRPQRTSLAGRSSDASCRPYPK*G 301
C ++A CPP +P T L ASC YP G
Sbjct: 242 CNSSAVGVCPPGKPMFTCLRNMCQYASCPAYPDAG 276
>SB_22282| Best HMM Match : 7tm_2 (HMM E-Value=9.5e-09)
Length = 712
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 403 AESCSCAV-CSRT-DRPTRPMTSTCRSYDRSSADSNC 507
+ES SCA C RT DR RP S C D S+ +C
Sbjct: 59 SESLSCAGRCGRTQDRMARPSPSKCYCDDLCSSLGDC 95
>SB_38235| Best HMM Match : Pox_A32 (HMM E-Value=0.32)
Length = 651
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 350 SEVRCGRRGGHAAAVRHERSHVRVLSAREPTDRLAR*RQRAAPTIAVP 493
S+ C R+ G R +R H S R P DR +R APT+ +P
Sbjct: 603 SKPECARQSGTELTERRKR-HFVSRSRRWPRDRASRRACARAPTMPLP 649
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,878,523
Number of Sequences: 59808
Number of extensions: 423403
Number of successful extensions: 1415
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -