Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0304.Seq
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.86 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.1  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   3.5  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   8.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.0  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 439 RFASRQHTNMTPLVPHRRSVSTTPSATNFACRAVERRFM 323
           ++  R H ++T  +  R+   T P  T+ ACR +   F+
Sbjct: 614 QYQIRDHKDVTQCISCRQG--TVPDETHSACRDIPEEFL 650


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
 Frame = +1

Query: 382 RC--GGAARAESCSCAVCSRTDRP--------TRPMTSTCRSYDRSSADSNC*RVEALQA 531
           RC  GG  ++    C +  + ++P        T PMTST  +  R+  +S C    +   
Sbjct: 298 RCFTGGPRKSHESQCPMLQKLEKPVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQ 357

Query: 532 RFPRXHAA 555
           +  R H A
Sbjct: 358 KKLRFHLA 365


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 598 ELRLRNEFSSRPFSDMQSSF 657
           E  LRN F S+PF   + S+
Sbjct: 5   EYHLRNHFGSKPFKCEKCSY 24


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 584 EDDIFWRIPTAACXRGNL 531
           E +++W +PT  C +  L
Sbjct: 42  EFNVYWNVPTFMCHKYGL 59


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/29 (20%), Positives = 15/29 (51%)
 Frame = +1

Query: 145  PVTKKSLTLLQXSQNEEVSRLSSWARGAC 231
            P+  ++   ++ + N     L++W+ G C
Sbjct: 1461 PIIPEAARFIEVATNSITLHLNAWSDGGC 1489



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 414  T*LRSCRTAAACPPRRPQRTSLAGRSSDASCRPYPK*G 301
            T +RS R+ +   PRR     L   + +  C P P+ G
Sbjct: 1671 TVIRSIRSHSTWDPRRHMYEELNHCAPNRRCPPPPRMG 1708


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,782
Number of Sequences: 438
Number of extensions: 3028
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)