Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0304.Seq
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72100.1 68414.m08334 late embryogenesis abundant domain-cont...    31   0.52 
At5g44090.1 68418.m05394 calcium-binding EF hand family protein,...    29   2.1  
At2g40180.1 68415.m04941 protein phosphatase 2C, putative / PP2C...    29   3.7  
At4g39690.1 68417.m05616 expressed protein                             27   8.5  
At1g24020.1 68414.m03032 Bet v I allergen family protein similar...    27   8.5  

>At1g72100.1 68414.m08334 late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein low similarity to embryogenic gene [Betula
           pendula] GI:4539485; contains Pfam profile PF02987: Late
           embryogenesis abundant protein
          Length = 480

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = -1

Query: 539 GNLACKA--STRQQLESAELRS*ERHVDVIGRVGRSVREQTAHE-HDSARAA--PPQRVH 375
           G + C A    RQ++ S   R+ +R VD +G     VRE  AH+ HD         + V 
Sbjct: 124 GEVICDAFGKCRQKIASVVGRAKDRTVDSVGETASDVREAAAHKAHDVKETVTHAARDVE 183

Query: 374 HAVRNELRLQGGRAT 330
             V ++ +   GR T
Sbjct: 184 DTVADQAQYAKGRVT 198


>At5g44090.1 68418.m05394 calcium-binding EF hand family protein,
           putative / protein phosphatase 2A 62 kDa B'' regulatory
           subunit, putative contains Pfam profile: PF00036 EF
           hand; identical to cDNA protein phosphatase 2A 62 kDa
           B'' regulatory subunit GI:5533378
          Length = 538

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +1

Query: 19  PNQMQYLIKKAPHARQFILQHLQGTNPVLYDVTGWVKASRENPVTKKSLTLLQXSQN 189
           PN+MQ+  ++  H  + I Q       +L  +   +K  +EN +T + L   + S N
Sbjct: 412 PNEMQFFYEEQLHRMECITQEPVLFEDILCQIFDMIKPEKENCITLQDLKASKLSGN 468


>At2g40180.1 68415.m04941 protein phosphatase 2C, putative / PP2C,
           putative contains PF00481: Protein phosphatase 2C
           domain; identical to protein phosphatase 2C (GI:4587992)
           [Arabidopsis thaliana]
          Length = 390

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 393 TAAACPPRRPQRTSLAGRSSD 331
           T  ACPPR+P+ T   G  S+
Sbjct: 64  TMVACPPRKPKETKTTGSDSE 84


>At4g39690.1 68417.m05616 expressed protein
          Length = 650

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 112 VTGWVKASRENPVTKKSLTLLQ 177
           V+ WV+ +R   +T+++LTLLQ
Sbjct: 620 VSDWVRRARNRAITEQALTLLQ 641


>At1g24020.1 68414.m03032 Bet v I allergen family protein similar to
           major pollen allergen Bet v 1 GB:CAA96544 GI:1321726
           from [Betula pendula]; contains Pfam profile PF00407:
           Pathogenesis-related protein Bet v I family
          Length = 155

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 60  QTVYIAAFTGN*PGAIRRHRLGEGEP 137
           +T+ + A  GN PG+IR    GEG P
Sbjct: 40  KTIQVLAGDGNAPGSIRLITYGEGSP 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,182,514
Number of Sequences: 28952
Number of extensions: 255686
Number of successful extensions: 811
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)