Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0303.Seq
(748 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D5791C Cluster: PREDICTED: similar to CG4033-PA;... 91 2e-17
UniRef50_P20028 Cluster: DNA-directed RNA polymerase I subunit R... 73 8e-12
UniRef50_Q9H9Y6 Cluster: DNA-directed RNA polymerase I subunit R... 68 2e-10
UniRef50_A7SSE2 Cluster: Predicted protein; n=1; Nematostella ve... 64 3e-09
UniRef50_Q8SSB7 Cluster: DNA-directed RNA polymerase; n=1; Encep... 64 5e-09
UniRef50_A0BY74 Cluster: DNA-directed RNA polymerase; n=2; Param... 62 1e-08
UniRef50_A6RAC1 Cluster: DNA-directed RNA polymerase; n=6; Ascom... 60 8e-08
UniRef50_A7AT93 Cluster: DNA-directed RNA polymerase, beta subun... 59 1e-07
UniRef50_O74633 Cluster: DNA-directed RNA polymerase I subunit R... 59 1e-07
UniRef50_P22138 Cluster: DNA-directed RNA polymerase I subunit R... 58 2e-07
UniRef50_Q54BM1 Cluster: DNA-directed RNA polymerase; n=2; Eukar... 57 5e-07
UniRef50_Q4N2L4 Cluster: DNA-directed RNA polymerase, beta subun... 56 7e-07
UniRef50_Q0UYS6 Cluster: Putative uncharacterized protein; n=1; ... 56 7e-07
UniRef50_Q27493 Cluster: DNA-directed RNA polymerase; n=3; Chrom... 56 9e-07
UniRef50_Q6C6G0 Cluster: DNA-directed RNA polymerase; n=1; Yarro... 55 2e-06
UniRef50_P28365 Cluster: DNA-directed RNA polymerase I subunit R... 54 4e-06
UniRef50_Q5CNH7 Cluster: DNA-directed RNA polymerase; n=2; Crypt... 52 2e-05
UniRef50_UPI00004993B0 Cluster: DNA-directed RNA polymerase subu... 47 6e-04
UniRef50_A3C638 Cluster: DNA-directed RNA polymerase; n=4; Oryza... 46 7e-04
UniRef50_A4RSZ5 Cluster: DNA-directed RNA polymerase; n=2; Ostre... 44 0.004
UniRef50_A5K506 Cluster: DNA-directed RNA polymerase; n=5; cellu... 44 0.005
UniRef50_Q9FXG4 Cluster: DNA-directed RNA polymerase; n=79; Magn... 43 0.009
UniRef50_Q9C8S4 Cluster: DNA-directed RNA polymerase; n=3; Arabi... 43 0.009
UniRef50_Q98S72 Cluster: DNA-directed RNA polymerase; n=1; Guill... 42 0.016
UniRef50_Q4QD43 Cluster: DNA-directed RNA polymerase polypeptide... 42 0.021
UniRef50_Q6E6F3 Cluster: DNA-directed RNA polymerase; n=2; Eukar... 41 0.028
UniRef50_A2EN74 Cluster: DNA-directed RNA polymerase; n=1; Trich... 41 0.037
UniRef50_Q7RER1 Cluster: DNA-directed RNA polymerase; n=6; Plasm... 40 0.065
UniRef50_Q8SQY8 Cluster: DNA-directed RNA polymerase; n=1; Encep... 39 0.11
UniRef50_Q4QA33 Cluster: DNA-directed RNA polymerase; n=6; Trypa... 38 0.35
UniRef50_Q7R5G4 Cluster: DNA-directed RNA polymerase; n=1; Giard... 37 0.46
UniRef50_Q74NB5 Cluster: NEQ173; n=1; Nanoarchaeum equitans|Rep:... 37 0.46
UniRef50_Q58444 Cluster: DNA-directed RNA polymerase subunit B''... 37 0.61
UniRef50_A2E3T5 Cluster: DNA-directed RNA polymerase; n=1; Trich... 36 0.80
UniRef50_Q8TXI6 Cluster: DNA-directed RNA polymerase second-larg... 36 1.4
UniRef50_Q03587 Cluster: DNA-directed RNA polymerase subunit B; ... 35 2.4
UniRef50_Q4Q3P2 Cluster: Putative uncharacterized protein; n=3; ... 33 5.6
UniRef50_Q0V2J9 Cluster: DNA-directed RNA polymerase; n=1; Phaeo... 33 9.9
>UniRef50_UPI0000D5791C Cluster: PREDICTED: similar to CG4033-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG4033-PA - Tribolium castaneum
Length = 272
Score = 91.5 bits (217), Expect = 2e-17
Identities = 44/85 (51%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 SGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDG-RS 434
+G+K+ + I +A+ + P VPM TVGVKS V P+ECRQRAATYKG RV I+G R
Sbjct: 60 NGDKITLEITDASLSCPLVPMGTVGVKSPKVFPSECRQRAATYKGRFIARVNWAINGERQ 119
Query: 435 VTIERSLGYLPIMIKSKMCHLADLS 509
++ +G LPIMIKS CHL+ +S
Sbjct: 120 TAFDKDMGQLPIMIKSNKCHLSAMS 144
Score = 88.6 bits (210), Expect = 1e-16
Identities = 43/76 (56%), Positives = 53/76 (69%)
Frame = +2
Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWEDARXISSQTMGV* 688
P EL++ EH EWGGYFV+KGHERL RMLL+TRRNYP+AIKRSGW+ AR G
Sbjct: 145 PAELVKHGEHEQEWGGYFVVKGHERLVRMLLMTRRNYPIAIKRSGWK-ARGSIFSDCG-- 201
Query: 689 VTLRHLPIQXXARTNV 736
+++R + A TNV
Sbjct: 202 ISMRCVREDQTATTNV 217
Score = 62.1 bits (144), Expect = 1e-08
Identities = 27/57 (47%), Positives = 38/57 (66%)
Frame = +1
Query: 79 LAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEF 249
+ PSL+ + P++ +PP+ N LQ LG PH+ SFNYM++ GL AI+DL P EF
Sbjct: 1 MLDEPSLSNITDPNFGRPPESQNVLLQQLGHPHVSSFNYMINQGLDQAISDLNPVEF 57
>UniRef50_P20028 Cluster: DNA-directed RNA polymerase I subunit
RPA2; n=5; Endopterygota|Rep: DNA-directed RNA
polymerase I subunit RPA2 - Drosophila melanogaster
(Fruit fly)
Length = 1129
Score = 72.9 bits (171), Expect = 8e-12
Identities = 26/48 (54%), Positives = 39/48 (81%)
Frame = +2
Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWED 652
P E+++ EH EWGG FVI+G+E++ RML++TRRN+P+ +KRS W+D
Sbjct: 152 PEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKD 199
Score = 67.7 bits (158), Expect = 3e-10
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 PSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDG-R 431
P+GEK+ + ++ AKP VP D + V+++ + PT+ RQ +Y G +R+ ++G +
Sbjct: 66 PAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQ 125
Query: 432 SVTIERSLGYLPIMIKSKMCHL 497
I LG +PIM++SK C+L
Sbjct: 126 KTPINMDLGEVPIMLRSKACNL 147
Score = 41.9 bits (94), Expect = 0.016
Identities = 17/47 (36%), Positives = 31/47 (65%)
Frame = +1
Query: 109 SHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEF 249
S P++++ PK + +L +LG PH+DSF+ ML GL + ++P+ +
Sbjct: 17 SRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHW 63
>UniRef50_Q9H9Y6 Cluster: DNA-directed RNA polymerase I subunit
RPA2; n=53; Coelomata|Rep: DNA-directed RNA polymerase I
subunit RPA2 - Homo sapiens (Human)
Length = 1135
Score = 68.1 bits (159), Expect = 2e-10
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 EKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSV-T 440
E++ TI +A + P VP T+ K V P ECR R +TY+G+L + ++G S
Sbjct: 71 ERISFTILDAVISPPTVPKGTI-CKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGI 129
Query: 441 IERSLGYLPIMIKSKMCHLADL 506
I++ LGY+PIM+KSK+C+L +L
Sbjct: 130 IKQFLGYVPIMVKSKLCNLRNL 151
Score = 58.8 bits (136), Expect = 1e-07
Identities = 24/47 (51%), Positives = 35/47 (74%)
Frame = +2
Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWE 649
P LIE +E A+E GGYF+I G E++ RML++ RRN+P+A+ R W+
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWK 199
Score = 46.8 bits (106), Expect = 6e-04
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1
Query: 73 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFE 252
+ L PSL + + P Y P + LQ L H++SFNY + +GL A+ + P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 253 F 255
F
Sbjct: 68 F 68
>UniRef50_A7SSE2 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 913
Score = 64.5 bits (150), Expect = 3e-09
Identities = 27/55 (49%), Positives = 37/55 (67%)
Frame = +2
Query: 485 NVSFG*FIPXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWE 649
N S P EL+ KNE + E GGYF++ G E++ RML++ RRNYP+AI R W+
Sbjct: 101 NCSLANLSPKELVRKNEESQEAGGYFIVNGIEKIIRMLILPRRNYPLAIIRPSWK 155
Score = 39.1 bits (87), Expect = 0.11
Identities = 18/70 (25%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +3
Query: 303 KPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDG-RSVTIERSLGYLPIMIK 479
+P++ ++ + L +CR++ +TY +L++ + ID ++ + + +P+M+K
Sbjct: 39 RPHIESFNFMLEEGLPLAAQCREKGSTYCSKLQVTLQWKIDNVPQGSVTKVIAAIPLMVK 98
Query: 480 SKMCHLADLS 509
S C LA+LS
Sbjct: 99 SNNCSLANLS 108
Score = 35.9 bits (79), Expect = 1.1
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 91 PSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFA 222
PSL + +Y + +Q L PHI+SFN+ML++GL A
Sbjct: 13 PSLKNLTLKNYGRLSDTQKQSIQDLVRPHIESFNFMLEEGLPLA 56
>UniRef50_Q8SSB7 Cluster: DNA-directed RNA polymerase; n=1;
Encephalitozoon cuniculi|Rep: DNA-directed RNA
polymerase - Encephalitozoon cuniculi
Length = 1062
Score = 63.7 bits (148), Expect = 5e-09
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Frame = +3
Query: 267 KVKVTIDEAAFAKPNVP-MDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRS-VT 440
K K+ ++E A P + D + V ++ LP ECR+R TYKG++ +RV+L D + VT
Sbjct: 49 KTKIIVEEIHVAPPFLSDKDHISVDRRL-LPRECRERGLTYKGKMVVRVSLFHDNKHVVT 107
Query: 441 IERSLGYLPIMIKSKMCHL 497
++S G+ PIM++S +CHL
Sbjct: 108 EDKSAGHFPIMVRSTLCHL 126
Score = 35.9 bits (79), Expect = 1.1
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 524 EKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIK 634
E E DE GGYF+I G +R R ++ +RN+ A K
Sbjct: 134 EVGEDEDEIGGYFIINGIDRFIRFNIMQKRNHIFAFK 170
>UniRef50_A0BY74 Cluster: DNA-directed RNA polymerase; n=2;
Paramecium tetraurelia|Rep: DNA-directed RNA polymerase
- Paramecium tetraurelia
Length = 1115
Score = 62.1 bits (144), Expect = 1e-08
Identities = 22/46 (47%), Positives = 38/46 (82%)
Frame = +2
Query: 515 ELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWED 652
EL+++ E +E+GGYF+I G+E++ RML++ +RNYP+A KR G+++
Sbjct: 135 ELVQQQEDCNEFGGYFIINGNEKIIRMLIIQKRNYPIAFKRPGYKN 180
Score = 46.4 bits (105), Expect = 7e-04
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 348 VLPTECRQRAATYKGELKIRVTLCIDGR-SVTIERSLGYLPIMIKSKMCHLADLS 509
VLPT+CRQ +Y + + ID T+ SLG +PI++KS+ CHL LS
Sbjct: 78 VLPTQCRQMKKSYTAPMLATICREIDDNPKETVRLSLGEIPILVKSQKCHLNGLS 132
>UniRef50_A6RAC1 Cluster: DNA-directed RNA polymerase; n=6;
Ascomycota|Rep: DNA-directed RNA polymerase -
Ajellomyces capsulatus NAm1
Length = 1214
Score = 59.7 bits (138), Expect = 8e-08
Identities = 23/46 (50%), Positives = 37/46 (80%)
Frame = +2
Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGW 646
P +L+++ E ++E GGYF++ G+E+L RML+V RRN+P+AI RS +
Sbjct: 177 PEQLVQRKEESEELGGYFIVNGNEKLIRMLIVGRRNFPMAIIRSSF 222
Score = 56.0 bits (129), Expect = 9e-07
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 PSGEKVKVTIDEAAFAKPNVPMDT-VGVKSQVVLPTECRQRAATYKGELKIRVTLCI-DG 428
P K+ V I E K +P +++ + P+ECR+R ATY+G L+ R+ + +G
Sbjct: 90 PRRNKLSVRITELFLEKAMLPASNKFSTRNREIYPSECRERHATYRGRLRARLEYRVNNG 149
Query: 429 RSVTIERSLGYLPIMIKSKMCHLADLS 509
R LG +PIM++S CHL S
Sbjct: 150 EWKESVRELGQVPIMLRSNRCHLEKCS 176
>UniRef50_A7AT93 Cluster: DNA-directed RNA polymerase, beta subunit,
putative; n=1; Babesia bovis|Rep: DNA-directed RNA
polymerase, beta subunit, putative - Babesia bovis
Length = 1283
Score = 59.3 bits (137), Expect = 1e-07
Identities = 24/42 (57%), Positives = 33/42 (78%)
Frame = +2
Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIK 634
P E++E+ E DE GGYFV++G+ER+ R L+V R NYP+AIK
Sbjct: 153 PEEMVEQGEDIDEPGGYFVVRGNERIVRQLIVLRSNYPLAIK 194
Score = 41.9 bits (94), Expect = 0.016
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +3
Query: 270 VKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRS--VTI 443
V+V++ P P + P + TY+ L ++ L I G S +T
Sbjct: 71 VQVSVLSLRIGNPTRPGSECLGSDNRMFPRHAKIAHTTYESSLIVKFGLKIPGTSKVLTK 130
Query: 444 ERSLGYLPIMIKSKMCHLADLS 509
E ++GY+PIM+KSK C+L +S
Sbjct: 131 ELTVGYIPIMVKSKRCNLDGIS 152
>UniRef50_O74633 Cluster: DNA-directed RNA polymerase I subunit
RPA2; n=14; Ascomycota|Rep: DNA-directed RNA polymerase
I subunit RPA2 - Neurospora crassa
Length = 1234
Score = 59.3 bits (137), Expect = 1e-07
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +2
Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWEDARXISSQTMGV* 688
P +L+ + E ++E GGYF++ G E+L RMLLV RRN+P+AI R +++ R S G
Sbjct: 171 PAQLVARKEESEELGGYFIVNGIEKLIRMLLVNRRNFPLAIVRPSFQN-RGASYTPYG-- 227
Query: 689 VTLRHLPIQXXARTNV 736
+ +R + ++TNV
Sbjct: 228 IIMRSVRPDETSQTNV 243
Score = 55.2 bits (127), Expect = 2e-06
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 PSGE-KVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCI-DG 428
P G+ K+ + K VP K++ + P ECR+R +Y+G+L I DG
Sbjct: 84 PQGKNKLTIRYKSIELQKSQVPPTNRWAKNREIFPAECRERHVSYRGKLSATFEYRINDG 143
Query: 429 RSVTIERSLGYLPIMIKSKMCHLADLS 509
R LG +PIM+KS CHL + S
Sbjct: 144 EPHEFVRELGQMPIMVKSNKCHLQNNS 170
>UniRef50_P22138 Cluster: DNA-directed RNA polymerase I subunit
RPA2; n=22; Eukaryota|Rep: DNA-directed RNA polymerase I
subunit RPA2 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1203
Score = 58.4 bits (135), Expect = 2e-07
Identities = 31/76 (40%), Positives = 47/76 (61%)
Frame = +2
Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWEDARXISSQTMGV* 688
P EL++ E +DE GGYF++ G E+L RML+V RRN+P+AI R + + R S G
Sbjct: 177 PYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFAN-RGASYSHYG-- 233
Query: 689 VTLRHLPIQXXARTNV 736
+ +R + ++TNV
Sbjct: 234 IQIRSVRPDQTSQTNV 249
Score = 54.0 bits (124), Expect = 4e-06
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Frame = +3
Query: 261 GEKVKVTIDEAAFAKPNVPMDTVGVKSQV---VLPTECRQRAATYKGELKIRVTLCI-DG 428
G K+ V++++ + AKP M GV S V V P+E RQR +Y+G+L +++ + +G
Sbjct: 92 GNKLSVSVEQVSIAKP---MSNDGVSSAVERKVYPSESRQRLTSYRGKLLLKLKWSVNNG 148
Query: 429 RSVTIE-RSLGYLPIMIKSKMCHLADLS 509
E R G LP+M++S CHL +S
Sbjct: 149 EENLFEVRDCGGLPVMLQSNRCHLNKMS 176
>UniRef50_Q54BM1 Cluster: DNA-directed RNA polymerase; n=2;
Eukaryota|Rep: DNA-directed RNA polymerase -
Dictyostelium discoideum AX4
Length = 1130
Score = 56.8 bits (131), Expect = 5e-07
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +2
Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGW 646
P +LIE E E GGYF++ G+E++ RML++T+ N+PVA+ R W
Sbjct: 137 PEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALHRKAW 182
Score = 33.9 bits (74), Expect = 4.3
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 154 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFE 252
L+SL PHIDSF++ D G+ + D P FE
Sbjct: 5 LKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFE 37
Score = 33.1 bits (72), Expect = 7.5
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 438 TIERSLGYLPIMIKSKMCHLADLS 509
T E LG LPIM+KS+ CHL +S
Sbjct: 113 TFEVDLGRLPIMVKSRYCHLNGMS 136
>UniRef50_Q4N2L4 Cluster: DNA-directed RNA polymerase, beta subunit,
putative; n=2; Theileria|Rep: DNA-directed RNA
polymerase, beta subunit, putative - Theileria parva
Length = 1235
Score = 56.4 bits (130), Expect = 7e-07
Identities = 23/40 (57%), Positives = 32/40 (80%)
Frame = +2
Query: 515 ELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIK 634
E+I++ E ADE GGYF+IKG+E++ R L+V R NYP+A K
Sbjct: 143 EMIKQGEDADEPGGYFIIKGNEKMLRQLIVPRSNYPIAFK 182
Score = 34.7 bits (76), Expect = 2.4
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +3
Query: 270 VKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTL-CIDGRSV-TI 443
VKV+I P P SQ + P + TY+ L + + + S+ T
Sbjct: 59 VKVSIISLKIGYPTRPGSECIGTSQKMYPRHAKISHTTYEAPLVVTFGIKFFESESIITK 118
Query: 444 ERSLGYLPIMIKSKMCHLADLS 509
E +G++PIM++S C+L LS
Sbjct: 119 EVPVGHIPIMVRSNRCNLKGLS 140
>UniRef50_Q0UYS6 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 1101
Score = 56.4 bits (130), Expect = 7e-07
Identities = 22/46 (47%), Positives = 34/46 (73%)
Frame = +2
Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGW 646
P +L++ E ++E GGYF++ G E++ RML V RRN+P+AIKR +
Sbjct: 173 PDQLVKAKEESEELGGYFIVNGIEKIIRMLQVNRRNFPMAIKRGAF 218
Score = 55.6 bits (128), Expect = 1e-06
Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Frame = +3
Query: 315 PMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIE-RSLGYLPIMIKSKMC 491
P + V +K++ +LP ECR+R ATY+G+L+ R+ ++ E LG +PIM++S C
Sbjct: 107 PSNKVALKNRNILPAECRERHATYRGKLRARLEWKVNNGDWREEVCDLGAVPIMLRSNRC 166
Query: 492 HLADLS 509
HL ++S
Sbjct: 167 HLENMS 172
>UniRef50_Q27493 Cluster: DNA-directed RNA polymerase; n=3;
Chromadorea|Rep: DNA-directed RNA polymerase -
Caenorhabditis elegans
Length = 1127
Score = 56.0 bits (129), Expect = 9e-07
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +3
Query: 258 SGEKVKVTIDEAAFAKPNVPMDTVGVKSQV-VLPTECRQRAATYKGELKIRVTLCIDG-R 431
+G+ V + A KP + + +LP ECRQR TY G LK+ + + ++G R
Sbjct: 37 NGDAVTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSR 96
Query: 432 SVTIERSLGYLPIMIKSKMCHLADLS 509
IE LG +PIM++S+ CHL +S
Sbjct: 97 LDIIEIILGKVPIMLRSEGCHLRGMS 122
Score = 48.8 bits (111), Expect = 1e-04
Identities = 20/53 (37%), Positives = 34/53 (64%)
Frame = +2
Query: 515 ELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWEDARXISSQ 673
EL+ E E GGYF++ G E++ R+L+ RRN+P+AI R +++ + S+
Sbjct: 125 ELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSE 177
>UniRef50_Q6C6G0 Cluster: DNA-directed RNA polymerase; n=1; Yarrowia
lipolytica|Rep: DNA-directed RNA polymerase - Yarrowia
lipolytica (Candida lipolytica)
Length = 1165
Score = 54.8 bits (126), Expect = 2e-06
Identities = 30/76 (39%), Positives = 46/76 (60%)
Frame = +2
Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWEDARXISSQTMGV* 688
P +++ E ++E GGYFVI G E+L R+L+V RRN+P+AI R + R + T G
Sbjct: 158 PKDMVAHKEESEEQGGYFVINGLEKLIRLLIVQRRNHPLAIIRKSF-TKRGSNYTTFG-- 214
Query: 689 VTLRHLPIQXXARTNV 736
V +R + ++TNV
Sbjct: 215 VQIRSVRPDQSSQTNV 230
Score = 51.2 bits (117), Expect = 3e-05
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 261 GEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVT 440
G ++ + + +P V + ++ V P+ECR+R ATY+ + + + ++G
Sbjct: 74 GNRLAIRVANVQLGRPTVSANDKTTINRKVFPSECRERMATYRARMVLTLGYSVNGGPEK 133
Query: 441 IE-RSLGYLPIMIKSKMCHL 497
E R +G +PIM+ S CHL
Sbjct: 134 FESRDVGMIPIMMGSNRCHL 153
>UniRef50_P28365 Cluster: DNA-directed RNA polymerase I subunit
RPA2; n=2; Intramacronucleata|Rep: DNA-directed RNA
polymerase I subunit RPA2 - Euplotes octocarinatus
Length = 1166
Score = 54.0 bits (124), Expect = 4e-06
Identities = 21/42 (50%), Positives = 33/42 (78%)
Frame = +2
Query: 515 ELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRS 640
EL ++ E E+GGYF++ G+E++ RML+V +RN+P+A KRS
Sbjct: 142 ELAKRGEDMLEFGGYFIVNGNEKVIRMLIVPKRNFPIAFKRS 183
Score = 37.1 bits (82), Expect = 0.46
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +3
Query: 273 KVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSV-TIER 449
K+T+ +F + + S ++ P+ECRQR TY L + D V +
Sbjct: 60 KLTLWYDSFELGQPSLGEIDYDSHILYPSECRQRKMTYTIPLFATIFKKFDDEMVDNFKV 119
Query: 450 SLGYLPIMIKSKMCHLADLS 509
LG +P M + K C+L L+
Sbjct: 120 KLGDIPTMGRKKFCNLKGLT 139
>UniRef50_Q5CNH7 Cluster: DNA-directed RNA polymerase; n=2;
Cryptosporidium|Rep: DNA-directed RNA polymerase -
Cryptosporidium hominis
Length = 1281
Score = 51.6 bits (118), Expect = 2e-05
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +2
Query: 515 ELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKR 637
EL+EK E +E GGYF+I G+ER+ R ++ R NYP+ +KR
Sbjct: 143 ELVEKGEDPNEVGGYFIINGNERVIRYVIQQRCNYPIGLKR 183
>UniRef50_UPI00004993B0 Cluster: DNA-directed RNA polymerase
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase subunit - Entamoeba
histolytica HM-1:IMSS
Length = 1106
Score = 46.8 bits (106), Expect = 6e-04
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGW 646
P E I E E GGYF+I G ER RM++ + N+P+A+ R W
Sbjct: 126 PEERINIREDPHEIGGYFIINGIERYLRMIVYAKPNHPLAVTRPSW 171
Score = 40.3 bits (90), Expect = 0.049
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +3
Query: 348 VLPTECRQRAATYKGELKIRVTLCIDGRSVTIERSLGYLPIMIKSKMC 491
+ P CR A TY G +K+ +T+ + + TIE G +PIM+ S C
Sbjct: 70 LFPYMCRSAALTYSGRIKLTITIKENDSNKTIEVDGGEIPIMVGSSKC 117
>UniRef50_A3C638 Cluster: DNA-directed RNA polymerase; n=4; Oryza
sativa|Rep: DNA-directed RNA polymerase - Oryza sativa
subsp. japonica (Rice)
Length = 1134
Score = 46.4 bits (105), Expect = 7e-04
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +2
Query: 515 ELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGW 646
+LI E A E GGYF+ G ERL R+L++ +RNYP+ + R +
Sbjct: 102 KLIFHGEEATEMGGYFICGGMERLVRILILQKRNYPMGLIRGSF 145
Score = 33.9 bits (74), Expect = 4.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 154 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSE 246
L+ L PHIDSF+Y +D+GL + + P E
Sbjct: 18 LRELYRPHIDSFDYFIDEGLDKMLQSIRPVE 48
>UniRef50_A4RSZ5 Cluster: DNA-directed RNA polymerase; n=2;
Ostreococcus|Rep: DNA-directed RNA polymerase -
Ostreococcus lucimarinus CCE9901
Length = 1145
Score = 44.0 bits (99), Expect = 0.004
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +2
Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWEDARXISSQ 673
P +L+ + E A E GGYF+I G ER+ RM++ RR++ + + R + + S+
Sbjct: 157 PAQLVARGEEAHEAGGYFIINGIERMIRMIIQQRRHHILGLCRRAFTKRSPLFSE 211
Score = 39.1 bits (87), Expect = 0.11
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 354 PTECRQRAATYKGELKIRVTLCIDGRSVTIER-SLGYLPIMIKSKMCHLADLS 509
P CR+ +YK L ++ IDG +V +LG P+M+KS +C LA LS
Sbjct: 104 PRGCREGGESYKAPLSVQFCWQIDGENVQRRVVNLGDCPVMVKSDVCSLALLS 156
>UniRef50_A5K506 Cluster: DNA-directed RNA polymerase; n=5; cellular
organisms|Rep: DNA-directed RNA polymerase - Plasmodium
vivax
Length = 1562
Score = 43.6 bits (98), Expect = 0.005
Identities = 20/84 (23%), Positives = 43/84 (51%)
Frame = +3
Query: 258 SGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSV 437
S + +K + + P + D ++ P C+ A TY+GE+ +++ + +
Sbjct: 141 STDSIKFYVSDIKIKNPVLKNDKGETRNDY--PYLCKLSARTYEGEITLKINKKTNDEII 198
Query: 438 TIERSLGYLPIMIKSKMCHLADLS 509
+ S GY+P+M+ S +C+L+ L+
Sbjct: 199 STTVSAGYIPVMVLSNLCNLSSLN 222
>UniRef50_Q9FXG4 Cluster: DNA-directed RNA polymerase; n=79;
Magnoliophyta|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1233
Score = 42.7 bits (96), Expect = 0.009
Identities = 16/48 (33%), Positives = 31/48 (64%)
Frame = +2
Query: 515 ELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWEDAR 658
+L++ E E GGYF++ G ER+ R ++ +RN+P ++ R+ + D +
Sbjct: 174 KLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRK 221
Score = 35.9 bits (79), Expect = 1.1
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 336 KSQVVLPTECRQRAATYKGELKIRVTLCI-DGRSVTIERSLGYLPIMIKSKMCHL 497
+ + +LP ECRQ +Y G V DG V + G PIM+ SK+C L
Sbjct: 113 RKEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMSKLCSL 167
>UniRef50_Q9C8S4 Cluster: DNA-directed RNA polymerase; n=3;
Arabidopsis thaliana|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1114
Score = 42.7 bits (96), Expect = 0.009
Identities = 16/48 (33%), Positives = 31/48 (64%)
Frame = +2
Query: 515 ELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWEDAR 658
+L++ E E GGYF++ G ER+ R ++ +RN+P ++ R+ + D +
Sbjct: 92 KLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRK 139
>UniRef50_Q98S72 Cluster: DNA-directed RNA polymerase; n=1;
Guillardia theta|Rep: DNA-directed RNA polymerase -
Guillardia theta (Cryptomonas phi)
Length = 1109
Score = 41.9 bits (94), Expect = 0.016
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +2
Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNY 619
P +L E +E E GGYF+ G E+L R+++V RRNY
Sbjct: 125 PHQLTEIDEEEFENGGYFITNGTEKLIRLIIVPRRNY 161
Score = 36.3 bits (80), Expect = 0.80
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +3
Query: 315 PMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERSLGYLPIMIKSKMCH 494
P+ G +LP + ++ TY+GE I + + + ++ + G PIMIKS C+
Sbjct: 60 PIYQFGTLIHKILPRQSKELKITYQGEFIISINIQNNEKNFNLVYKEGDFPIMIKSLKCN 119
Query: 495 LADL 506
L L
Sbjct: 120 LFGL 123
>UniRef50_Q4QD43 Cluster: DNA-directed RNA polymerase polypeptide,
putative; n=7; Trypanosomatidae|Rep: DNA-directed RNA
polymerase polypeptide, putative - Leishmania major
Length = 1132
Score = 41.5 bits (93), Expect = 0.021
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Frame = +3
Query: 342 QVVLPTECRQRAATYKGEL--KIRVTLCIDGRSVTIER--SLGYLPIMIKSKMCHL 497
++V P ECR R TY+G++ ++ T R++ +E+ +G +PIM+KSK C+L
Sbjct: 91 KLVTPQECRIRDMTYRGDMIVDVQYTSRDRSRAMLVEKDVKIGTIPIMLKSKCCNL 146
>UniRef50_Q6E6F3 Cluster: DNA-directed RNA polymerase; n=2;
Eukaryota|Rep: DNA-directed RNA polymerase - Antonospora
locustae (Nosema locustae)
Length = 1014
Score = 41.1 bits (92), Expect = 0.028
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +3
Query: 348 VLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS--LGYLPIMIKSKMCHLAD 503
VLP ECR R TY G + + + R V I+++ +G +PIM++S +CHL +
Sbjct: 6 VLPEECRLRDLTYCGNIYVDIEYT-KHRKVIIKKNVFIGKVPIMLRSMLCHLEE 58
>UniRef50_A2EN74 Cluster: DNA-directed RNA polymerase; n=1;
Trichomonas vaginalis G3|Rep: DNA-directed RNA
polymerase - Trichomonas vaginalis G3
Length = 1104
Score = 40.7 bits (91), Expect = 0.037
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +2
Query: 533 EHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKR 637
E E GGYF+ G+E+L R+L++ R+NY A+ R
Sbjct: 137 EEPTEAGGYFIYSGYEKLLRLLILNRQNYVFALNR 171
>UniRef50_Q7RER1 Cluster: DNA-directed RNA polymerase; n=6;
Plasmodium (Vinckeia)|Rep: DNA-directed RNA polymerase -
Plasmodium yoelii yoelii
Length = 1470
Score = 39.9 bits (89), Expect = 0.065
Identities = 21/82 (25%), Positives = 39/82 (47%)
Frame = +3
Query: 264 EKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTI 443
E++K I + P + D + P C+ +TY+GE+ + + V
Sbjct: 135 ERIKFYISDIIIKTPVIKNDNGNTRPNY--PYLCKLACSTYEGEVLVVINKQYKNEIVRT 192
Query: 444 ERSLGYLPIMIKSKMCHLADLS 509
S G++PIM+ S +C+L +L+
Sbjct: 193 TVSTGFIPIMVLSDLCNLKNLN 214
>UniRef50_Q8SQY8 Cluster: DNA-directed RNA polymerase; n=1;
Encephalitozoon cuniculi|Rep: DNA-directed RNA
polymerase - Encephalitozoon cuniculi
Length = 1110
Score = 39.1 bits (87), Expect = 0.11
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 348 VLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS--LGYLPIMIKSKMCHL 497
V P ECR R TY + + + + R + ++R +G +P+M++S CHL
Sbjct: 76 VFPIECRLRDITYSANIYVDIEY-VRNRQIIVKRDVCIGKMPVMLRSSRCHL 126
>UniRef50_Q4QA33 Cluster: DNA-directed RNA polymerase; n=6;
Trypanosomatidae|Rep: DNA-directed RNA polymerase -
Leishmania major
Length = 1616
Score = 37.5 bits (83), Expect = 0.35
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 533 EHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKR 637
E E GGYF++ G ER+ R LL+ R N P+ I R
Sbjct: 498 EEQKEVGGYFIMNGGERILRALLMQRCNVPINIYR 532
>UniRef50_Q7R5G4 Cluster: DNA-directed RNA polymerase; n=1; Giardia
lamblia ATCC 50803|Rep: DNA-directed RNA polymerase -
Giardia lamblia ATCC 50803
Length = 1238
Score = 37.1 bits (82), Expect = 0.46
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 354 PTECRQRAATYKGELKIRVTLCIDGRSVTI---ERSLGYLPIMIKSKMCHLADLS 509
P ECRQR TY + I V +S E +GY+PIM++S C L + S
Sbjct: 100 PHECRQRNMTYAAPITIDVRCKASNKSSVQYYKEICIGYIPIMLRSNRCILTNKS 154
>UniRef50_Q74NB5 Cluster: NEQ173; n=1; Nanoarchaeum equitans|Rep:
NEQ173 - Nanoarchaeum equitans
Length = 493
Score = 37.1 bits (82), Expect = 0.46
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +3
Query: 342 QVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIER--SLGYLPIMIKSKMCHLADLS 509
+++ P E R R TY +++R DG + +R +G LP+M++SK+C+ LS
Sbjct: 79 RIIYPYEARLRQLTYSAPVRVRFQYYEDGE-LKEDRWVKIGELPVMVRSKICNTYGLS 135
>UniRef50_Q58444 Cluster: DNA-directed RNA polymerase subunit B'';
n=1; Methanocaldococcus jannaschii|Rep: DNA-directed RNA
polymerase subunit B'' - Methanococcus jannaschii
Length = 498
Score = 36.7 bits (81), Expect = 0.61
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Frame = +3
Query: 273 KVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCI----DGRS-V 437
KV + + KP + ++ + P E R R TY L + +T I D R
Sbjct: 52 KVKLGKIKVGKPVIKEADGSIRP--ITPMEARIRDLTYSVPLYLEMTPIIGEGEDAREGE 109
Query: 438 TIERSLGYLPIMIKSKMCHL 497
T+E +G LP+M+ SK+CHL
Sbjct: 110 TVEVYIGELPVMLGSKICHL 129
>UniRef50_A2E3T5 Cluster: DNA-directed RNA polymerase; n=1;
Trichomonas vaginalis G3|Rep: DNA-directed RNA
polymerase - Trichomonas vaginalis G3
Length = 1142
Score = 36.3 bits (80), Expect = 0.80
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +3
Query: 309 NVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTI--ERSLGYLPIMIKS 482
N+ +D +++Q++ P CR TY G + + ++G +V + + LPIM++S
Sbjct: 83 NIYVDRPKIRNQILTPQMCRLSDETYSGNVLVDYDF-VNGSTVKSFNNQCIAKLPIMLQS 141
Query: 483 KMCHLADLS 509
C+L + S
Sbjct: 142 NRCYLYNAS 150
>UniRef50_Q8TXI6 Cluster: DNA-directed RNA polymerase second-largest
subunit, the N-terminal part; n=1; Methanopyrus
kandleri|Rep: DNA-directed RNA polymerase second-largest
subunit, the N-terminal part - Methanopyrus kandleri
Length = 525
Score = 35.5 bits (78), Expect = 1.4
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 348 VLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS-LGYLPIMIKSKMCHLADLS 509
+ P E R R Y L + + DG V + +G LP+M++SK+C+ LS
Sbjct: 88 IYPMEARLRNMLYSAPLYAEIVMYEDGEEVERDNVYVGELPVMVRSKVCNTYGLS 142
>UniRef50_Q03587 Cluster: DNA-directed RNA polymerase subunit B;
n=12; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit B - Thermoplasma acidophilum
Length = 1195
Score = 34.7 bits (76), Expect = 2.4
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 303 KPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIER-SLGYLPIMIK 479
KP + + G +Q+ P E R R Y + +++ + DG E +G LP+M++
Sbjct: 89 KPEIK-EASGASNQIT-PNEARLRDLNYLAPVTLKLRIVEDGIEKGSEIIKVGDLPVMVR 146
Query: 480 SKMCHLAD 503
SK+C L++
Sbjct: 147 SKICTLSE 154
>UniRef50_Q4Q3P2 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1378
Score = 33.5 bits (73), Expect = 5.6
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +3
Query: 255 PSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRS 434
PSGE D A P +TVGV S PT AT + E ++R+ +C+DG +
Sbjct: 650 PSGEAAARKADVPAAPAVEKPAETVGVASDAT-PT------ATLESEKQVRLVVCVDGTA 702
Query: 435 VTI 443
+
Sbjct: 703 TVL 705
>UniRef50_Q0V2J9 Cluster: DNA-directed RNA polymerase; n=1;
Phaeosphaeria nodorum|Rep: DNA-directed RNA polymerase -
Phaeosphaeria nodorum (Septoria nodorum)
Length = 1137
Score = 32.7 bits (71), Expect = 9.9
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 348 VLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS---LGYLPIMIKSKMCHLA 500
V P ECR R TY I V + S ++R+ +G +PIM+KS C LA
Sbjct: 182 VTPNECRLRDMTYAAP--IVVDIVYTRGSAKVKRTGIKIGRMPIMLKSNKCVLA 233
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 734,396,376
Number of Sequences: 1657284
Number of extensions: 14593802
Number of successful extensions: 30412
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 29332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30382
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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