Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0303.Seq
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    57   2e-09
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   0.70 
SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    29   0.93 
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    27   2.1  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    27   2.8  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    26   5.0  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    26   6.6  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    25   8.7  

>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
 Frame = +3

Query: 261 GEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVT 440
           G K+   +DE   AKP +        ++ V P E R+R  TYK  L ++ +  ++G    
Sbjct: 125 GNKISFRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGGPRQ 184

Query: 441 IE-RSLGYLPIMIKSKMCHLADLS 509
            E R +G +PIM++S  CHL  LS
Sbjct: 185 SEMREVGMIPIMVRSNRCHLEGLS 208



 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 24/55 (43%), Positives = 35/55 (63%)
 Frame = +2

Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWEDARXISSQ 673
           P ELI   E ++E GGYF++ G E+L RML++ +RN+P AI R  + +     SQ
Sbjct: 209 PAELIAHKEESEEMGGYFIVNGIEKLIRMLILPKRNHPTAIIRPSFANRGTSYSQ 263



 Score = 30.7 bits (66), Expect = 0.23
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +1

Query: 121 YRKPPKIAN--PYLQSLGAPHIDSFNYMLDDG-LKFAIADL 234
           ++ PPK     P LQ    PH+DSFN + + G L +A+ ++
Sbjct: 65  FKNPPKDGTSFPDLQKAVKPHVDSFNALTNAGLLNYAVKEI 105


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 70   PKKLAQNPSLAYTSHPDYR-KPPKIANPYLQSLGAPHIDSFNYMLDDGLK-FAIADLL 237
            P  L +  +L +  HP+   KP  +  P  ++  A HID  +   D G   F + +LL
Sbjct: 902  PNMLLKEANLYHLQHPEIPLKPDSLLGPEEENATASHIDGSSNASDSGYNAFVLKELL 959


>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -3

Query: 140 IFGGFL*SGWLVYANDGFWASFFGFMLI*LR 48
           I+  FL S  LVYAN+GF     GF L  LR
Sbjct: 244 IYKNFLHSAKLVYANEGFRGFLDGFFLRVLR 274


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 655 RIFPS*PLDGHRVVPSCNQQHTG*TLMALYYKISTPFISMFIF 527
           RIF   P  G +VV + N   T  T+  +YY +   F+    F
Sbjct: 769 RIFEPAPPGGRKVVIATNIAETSLTIDGIYYVVDPGFVKQSCF 811


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 515 ELIEKNEHADEWGGYFVIKGHERL 586
           EL + NE   + GGYF+I G E++
Sbjct: 173 ELYDLNECPYDQGGYFIINGSEKV 196


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = -3

Query: 356 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFTTRNSNSD 240
           WEDHL    + + G + F    F+      DLF  +   ++
Sbjct: 295 WEDHLAVKHFSVEGQLEFRAILFVPRRAPMDLFEAKRKKNN 335


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 337 LTPTVSMGTLGLANAASSIVTLTFSPL 257
           +TP  SMG L   N+ S + TLT SP+
Sbjct: 31  MTPP-SMGALNANNSNSQLSTLTISPM 56


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 231 ISYSKFQAIVQHIIE*IYVRRSKTLKVRICYFW 133
           I+     +I+ H+I  +   R+K LK  + Y+W
Sbjct: 44  INGDSLPSILMHVIRFVMPSRNKELKKLLYYYW 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,167
Number of Sequences: 5004
Number of extensions: 63084
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)