Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0303.Seq
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0498 - 18342517-18342960,18343164-18343397,18343569-183437... 40 0.003
04_01_0042 + 473912-474058,474208-474349,474442-476264 31 0.74
09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821 31 1.3
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 31 1.3
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 31 1.3
09_04_0517 - 18253325-18253870,18254209-18254781,18254888-182551... 30 2.2
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 30 2.2
03_04_0003 + 16227213-16227220,16229085-16229282,16229565-162296... 30 2.2
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 29 3.9
03_06_0376 + 33479776-33479958,33481055-33481236,33481345-334814... 29 5.2
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 29 5.2
>10_08_0498 -
18342517-18342960,18343164-18343397,18343569-18343781,
18344095-18344238,18344348-18344470,18345094-18345169,
18345252-18345355,18345745-18345819,18345942-18346106,
18346248-18346346,18346478-18346677,18346767-18346846,
18346922-18347049,18347936-18348048,18348580-18348672,
18349264-18349348,18350116-18350233,18350326-18350399,
18350485-18350537,18350624-18350804,18351219-18351264,
18351355-18351432,18351556-18351626,18351735-18351798,
18352064-18352071
Length = 1022
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +2
Query: 551 GGYFVIKGHERLARMLLVTRRNYPVAIKRSGW 646
GGYF+ G ERL R+L++ +RNYP+ + R +
Sbjct: 2 GGYFICGGMERLVRILILQKRNYPMGLIRGSF 33
>04_01_0042 + 473912-474058,474208-474349,474442-476264
Length = 703
Score = 31.5 bits (68), Expect = 0.74
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 356 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFTTR 255
WEDHL + + G + F F+ FDLF TR
Sbjct: 298 WEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDTR 333
>09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821
Length = 576
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -3
Query: 356 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFTTRNSNSD 240
WE+HL + + G + F F+ FDLF TR ++
Sbjct: 39 WEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKQNN 79
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -3
Query: 356 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFTTRNSNSD 240
WE+HL + + G + F F+ FDLF TR ++
Sbjct: 293 WEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKQNN 333
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -3
Query: 356 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFTTRNSNSD 240
WE+HL + + G + F F+ FDLF TR ++
Sbjct: 293 WEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKQNN 333
>09_04_0517 -
18253325-18253870,18254209-18254781,18254888-18255100,
18255554-18255685,18255804-18255944,18256104-18256325
Length = 608
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 506 IPXELIEKNEHADEWGGYFVIKGHERLARMLL 601
IP E+ K++ DEW F +K H+ + ++L+
Sbjct: 93 IPEEMKLKHKGFDEWNSDFTLKNHQPIVQILI 124
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 356 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFTTR 255
WE+HL + + G + F F+ FDLF TR
Sbjct: 293 WEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTR 328
>03_04_0003 +
16227213-16227220,16229085-16229282,16229565-16229657,
16230152-16230218,16230377-16230467,16230558-16230610,
16230784-16230848,16230905-16230968
Length = 212
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +3
Query: 312 VPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS----LGYLPIMIK 479
VP V ++ + P CR TY + + + G+ ++R +GYLPIM++
Sbjct: 77 VPSVQVQYIAEKITPHFCRLTDRTYSAPVLADIEYTV-GKQYELKRKPNFIIGYLPIMLR 135
Query: 480 SKMCHL 497
S C L
Sbjct: 136 SHACVL 141
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 70 PKKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLD 204
P + A PS+ S DY KP + + L S+G P S N LD
Sbjct: 358 PVEPAVGPSIDLLSGDDYFKPEPVNSQALVSVGNPPAASANNTLD 402
>03_06_0376 +
33479776-33479958,33481055-33481236,33481345-33481469,
33481858-33482057,33482629-33482762,33483095-33483158,
33483764-33484441,33484723-33484839
Length = 560
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 655 RIFPS*PLD--GHRVVPSCNQQHTG*TLMALYYKISTPFISMF 533
RI PS P++ G + N +H G T L+Y PF S F
Sbjct: 53 RIEPSPPVEVRGEAIAKELNLRHRGVTYSVLFYAAWCPFSSKF 95
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 258 SGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTE 362
SGEKVKV+ D+AA P V + + K VV E
Sbjct: 177 SGEKVKVSTDDAAGHTPMVAVRALEKKVSVVASAE 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,590,952
Number of Sequences: 37544
Number of extensions: 397547
Number of successful extensions: 808
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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