Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0303.Seq
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          29   3.0  
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                       29   5.3  
SB_5096| Best HMM Match : NAD_binding_6 (HMM E-Value=0.044)            28   7.0  
SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)                  28   9.2  

>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 597 CWLHEGTTLWPSSGQDG 647
           CW HEG   WP  G +G
Sbjct: 308 CWYHEGFERWPEYGHEG 324


>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -3

Query: 356 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFTTRNSNSD 240
           WE+HL    + + G + F    F+     FDLF +R   ++
Sbjct: 251 WEEHLAVKHFSVEGQLEFRALLFVPKRAPFDLFESRKKRNN 291


>SB_5096| Best HMM Match : NAD_binding_6 (HMM E-Value=0.044)
          Length = 261

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 288 EAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKI 404
           + +F KP +P+   G +S   +PT  ++R  T+    +I
Sbjct: 121 QRSFGKPKIPLLMAGKESYAPVPTPAKRRRLTHIAHARI 159


>SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)
          Length = 829

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +1

Query: 64  MNPKKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPS 243
           +NP  L   P  + TS    R+ P +ANP   S G+ H D  +  +    K   +  L +
Sbjct: 244 VNPSSLVSGPVNSETSEGKARETPDLANP--NSSGSYHEDKKHVTMTTAAKSRSSTTLGT 301

Query: 244 E 246
           E
Sbjct: 302 E 302


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,538,244
Number of Sequences: 59808
Number of extensions: 449171
Number of successful extensions: 921
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)