Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0303.Seq
(748 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC110833-1|AAI10834.1| 952|Homo sapiens POLR1B protein protein. 68 3e-11
AK128044-1|BAC87247.1| 1135|Homo sapiens protein ( Homo sapiens ... 68 3e-11
AK001678-1|BAA91831.1| 336|Homo sapiens protein ( Homo sapiens ... 68 3e-11
AC012442-2|AAX81999.1| 1135|Homo sapiens unknown protein. 68 3e-11
AK022533-1|BAB14082.1| 1079|Homo sapiens protein ( Homo sapiens ... 59 2e-08
AY956767-1|AAX38254.1| 361|Homo sapiens heat shock protein 90Bf... 31 5.8
>BC110833-1|AAI10834.1| 952|Homo sapiens POLR1B protein protein.
Length = 952
Score = 68.1 bits (159), Expect = 3e-11
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 EKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSV-T 440
E++ TI +A + P VP T+ K V P ECR R +TY+G+L + ++G S
Sbjct: 71 ERISFTILDAVISPPTVPKGTI-CKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGI 129
Query: 441 IERSLGYLPIMIKSKMCHLADL 506
I++ LGY+PIM+KSK+C+L +L
Sbjct: 130 IKQFLGYVPIMVKSKLCNLRNL 151
Score = 58.8 bits (136), Expect = 2e-08
Identities = 24/47 (51%), Positives = 35/47 (74%)
Frame = +2
Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWE 649
P LIE +E A+E GGYF+I G E++ RML++ RRN+P+A+ R W+
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWK 199
Score = 46.8 bits (106), Expect = 8e-05
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1
Query: 73 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFE 252
+ L PSL + + P Y P + LQ L H++SFNY + +GL A+ + P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 253 F 255
F
Sbjct: 68 F 68
>AK128044-1|BAC87247.1| 1135|Homo sapiens protein ( Homo sapiens
cDNA FLJ46164 fis, clone TESTI4002799, highly similar
to DNA-directed RNA polymerase I 135 kDa polypeptide (EC
2.7.7.6). ).
Length = 1135
Score = 68.1 bits (159), Expect = 3e-11
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 EKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSV-T 440
E++ TI +A + P VP T+ K V P ECR R +TY+G+L + ++G S
Sbjct: 71 ERISFTILDAVISPPTVPKGTI-CKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGI 129
Query: 441 IERSLGYLPIMIKSKMCHLADL 506
I++ LGY+PIM+KSK+C+L +L
Sbjct: 130 IKQFLGYVPIMVKSKLCNLRNL 151
Score = 58.8 bits (136), Expect = 2e-08
Identities = 24/47 (51%), Positives = 35/47 (74%)
Frame = +2
Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWE 649
P LIE +E A+E GGYF+I G E++ RML++ RRN+P+A+ R W+
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWK 199
Score = 46.8 bits (106), Expect = 8e-05
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1
Query: 73 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFE 252
+ L PSL + + P Y P + LQ L H++SFNY + +GL A+ + P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 253 F 255
F
Sbjct: 68 F 68
>AK001678-1|BAA91831.1| 336|Homo sapiens protein ( Homo sapiens
cDNA FLJ10816 fis, clone NT2RP4000997, highly similar to
DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPEPTIDE (EC
2.7.7.6). ).
Length = 336
Score = 68.1 bits (159), Expect = 3e-11
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 EKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSV-T 440
E++ TI +A + P VP T+ K V P ECR R +TY+G+L + ++G S
Sbjct: 71 ERISFTILDAVISPPTVPKGTI-CKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGI 129
Query: 441 IERSLGYLPIMIKSKMCHLADL 506
I++ LGY+PIM+KSK+C+L +L
Sbjct: 130 IKQFLGYVPIMVKSKLCNLRNL 151
Score = 58.8 bits (136), Expect = 2e-08
Identities = 24/47 (51%), Positives = 35/47 (74%)
Frame = +2
Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWE 649
P LIE +E A+E GGYF+I G E++ RML++ RRN+P+A+ R W+
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWK 199
Score = 46.8 bits (106), Expect = 8e-05
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1
Query: 73 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFE 252
+ L PSL + + P Y P + LQ L H++SFNY + +GL A+ + P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 253 F 255
F
Sbjct: 68 F 68
>AC012442-2|AAX81999.1| 1135|Homo sapiens unknown protein.
Length = 1135
Score = 68.1 bits (159), Expect = 3e-11
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 EKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSV-T 440
E++ TI +A + P VP T+ K V P ECR R +TY+G+L + ++G S
Sbjct: 71 ERISFTILDAVISPPTVPKGTI-CKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGI 129
Query: 441 IERSLGYLPIMIKSKMCHLADL 506
I++ LGY+PIM+KSK+C+L +L
Sbjct: 130 IKQFLGYVPIMVKSKLCNLRNL 151
Score = 58.8 bits (136), Expect = 2e-08
Identities = 24/47 (51%), Positives = 35/47 (74%)
Frame = +2
Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWE 649
P LIE +E A+E GGYF+I G E++ RML++ RRN+P+A+ R W+
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWK 199
Score = 46.8 bits (106), Expect = 8e-05
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1
Query: 73 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFE 252
+ L PSL + + P Y P + LQ L H++SFNY + +GL A+ + P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 253 F 255
F
Sbjct: 68 F 68
>AK022533-1|BAB14082.1| 1079|Homo sapiens protein ( Homo sapiens
cDNA FLJ12471 fis, clone NT2RM1000894, highly similar to
DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPEPTIDE (EC
2.7.7.6). ).
Length = 1079
Score = 58.8 bits (136), Expect = 2e-08
Identities = 24/47 (51%), Positives = 35/47 (74%)
Frame = +2
Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWE 649
P LIE +E A+E GGYF+I G E++ RML++ RRN+P+A+ R W+
Sbjct: 97 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWK 143
Score = 40.3 bits (90), Expect = 0.007
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 73 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAI-ADL 234
+ L PSL + + P Y P + LQ L H++SFNY + +GL A+ AD+
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQADI 62
Score = 34.3 bits (75), Expect = 0.47
Identities = 13/22 (59%), Positives = 20/22 (90%)
Frame = +3
Query: 441 IERSLGYLPIMIKSKMCHLADL 506
I++ LGY+PIM+KSK+C+L +L
Sbjct: 74 IKQFLGYVPIMVKSKLCNLRNL 95
>AY956767-1|AAX38254.1| 361|Homo sapiens heat shock protein 90Bf
protein.
Length = 361
Score = 30.7 bits (66), Expect = 5.8
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -3
Query: 356 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFTTRNSNSD 240
WEDHL + I G + F FI FDLF N N D
Sbjct: 156 WEDHLAVKHFSIEGQLEFRALLFIPYRAPFDLF-ENNKNKD 195
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,050,754
Number of Sequences: 237096
Number of extensions: 2208153
Number of successful extensions: 3924
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3920
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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