Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0303.Seq
         (748 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X17298-1|CAA35185.1| 1129|Drosophila melanogaster RNA polymerase...    73   4e-13
AY075569-1|AAL68376.1| 1129|Drosophila melanogaster SD02110p pro...    73   4e-13
AE014134-97|AAF51503.1| 1129|Drosophila melanogaster CG4033-PA p...    73   4e-13
M59501-1|AAA28994.1|  462|Drosophila melanogaster tube protein p...    29   8.9  

>X17298-1|CAA35185.1| 1129|Drosophila melanogaster RNA polymerase 3,
           second  largestsubunit protein.
          Length = 1129

 Score = 72.9 bits (171), Expect = 4e-13
 Identities = 26/48 (54%), Positives = 39/48 (81%)
 Frame = +2

Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWED 652
           P E+++  EH  EWGG FVI+G+E++ RML++TRRN+P+ +KRS W+D
Sbjct: 152 PEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKD 199



 Score = 67.7 bits (158), Expect = 2e-11
 Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
 Frame = +3

Query: 255 PSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDG-R 431
           P+GEK+ + ++    AKP VP D + V+++ + PT+ RQ   +Y G   +R+   ++G +
Sbjct: 66  PAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQ 125

Query: 432 SVTIERSLGYLPIMIKSKMCHL 497
              I   LG +PIM++SK C+L
Sbjct: 126 KTPINMDLGEVPIMLRSKACNL 147



 Score = 41.9 bits (94), Expect = 9e-04
 Identities = 17/47 (36%), Positives = 31/47 (65%)
 Frame = +1

Query: 109 SHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEF 249
           S P++++ PK  + +L +LG PH+DSF+ ML  GL  +   ++P+ +
Sbjct: 17  SRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHW 63


>AY075569-1|AAL68376.1| 1129|Drosophila melanogaster SD02110p
           protein.
          Length = 1129

 Score = 72.9 bits (171), Expect = 4e-13
 Identities = 26/48 (54%), Positives = 39/48 (81%)
 Frame = +2

Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWED 652
           P E+++  EH  EWGG FVI+G+E++ RML++TRRN+P+ +KRS W+D
Sbjct: 152 PEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKD 199



 Score = 67.7 bits (158), Expect = 2e-11
 Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
 Frame = +3

Query: 255 PSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDG-R 431
           P+GEK+ + ++    AKP VP D + V+++ + PT+ RQ   +Y G   +R+   ++G +
Sbjct: 66  PAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQ 125

Query: 432 SVTIERSLGYLPIMIKSKMCHL 497
              I   LG +PIM++SK C+L
Sbjct: 126 KTPINMDLGEVPIMLRSKACNL 147



 Score = 41.9 bits (94), Expect = 9e-04
 Identities = 17/47 (36%), Positives = 31/47 (65%)
 Frame = +1

Query: 109 SHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEF 249
           S P++++ PK  + +L +LG PH+DSF+ ML  GL  +   ++P+ +
Sbjct: 17  SRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHW 63


>AE014134-97|AAF51503.1| 1129|Drosophila melanogaster CG4033-PA
           protein.
          Length = 1129

 Score = 72.9 bits (171), Expect = 4e-13
 Identities = 26/48 (54%), Positives = 39/48 (81%)
 Frame = +2

Query: 509 PXELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWED 652
           P E+++  EH  EWGG FVI+G+E++ RML++TRRN+P+ +KRS W+D
Sbjct: 152 PEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKD 199



 Score = 67.7 bits (158), Expect = 2e-11
 Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
 Frame = +3

Query: 255 PSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDG-R 431
           P+GEK+ + ++    AKP VP D + V+++ + PT+ RQ   +Y G   +R+   ++G +
Sbjct: 66  PAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQ 125

Query: 432 SVTIERSLGYLPIMIKSKMCHL 497
              I   LG +PIM++SK C+L
Sbjct: 126 KTPINMDLGEVPIMLRSKACNL 147



 Score = 41.9 bits (94), Expect = 9e-04
 Identities = 17/47 (36%), Positives = 31/47 (65%)
 Frame = +1

Query: 109 SHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEF 249
           S P++++ PK  + +L +LG PH+DSF+ ML  GL  +   ++P+ +
Sbjct: 17  SRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHW 63


>M59501-1|AAA28994.1|  462|Drosophila melanogaster tube protein
           protein.
          Length = 462

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -1

Query: 457 PKDLSMVTDLPSMHRVTLIFNSPLYVAALCRHSVGRTT*DLTPTVSMGTLGLANA 293
           P + +  TD P++ R+TL+ ++   V +   H+  + +   TPT S   L + +A
Sbjct: 308 PSNRTSSTDPPNIPRITLLIDNSGDVNSRPNHAPAKASTATTPTASSNNLPMISA 362


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,780,782
Number of Sequences: 53049
Number of extensions: 687444
Number of successful extensions: 1774
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1771
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3396574665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)