Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0303.Seq
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical pr...    56   3e-08
U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical pr...    34   0.093
Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AY037802-1|AAK94767.1|  669|Caenorhabditis elegans GLY-2 protein.      30   2.0  
AY037800-1|AAK94765.1|  661|Caenorhabditis elegans GLY-2 protein.      30   2.0  
AF154122-1|AAF74523.1|  669|Caenorhabditis elegans N-acetylgluco...    30   2.0  
AC006625-9|AAK68273.1|  669|Caenorhabditis elegans Glycosylation...    30   2.0  

>Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical
           protein F14B4.3 protein.
          Length = 1127

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
 Frame = +3

Query: 258 SGEKVKVTIDEAAFAKPNVPMDTVGVKSQV-VLPTECRQRAATYKGELKIRVTLCIDG-R 431
           +G+ V +    A   KP +          + +LP ECRQR  TY G LK+ + + ++G R
Sbjct: 37  NGDAVTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSR 96

Query: 432 SVTIERSLGYLPIMIKSKMCHLADLS 509
              IE  LG +PIM++S+ CHL  +S
Sbjct: 97  LDIIEIILGKVPIMLRSEGCHLRGMS 122



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 20/53 (37%), Positives = 34/53 (64%)
 Frame = +2

Query: 515 ELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKRSGWEDARXISSQ 673
           EL+   E   E GGYF++ G E++ R+L+  RRN+P+AI R  +++   + S+
Sbjct: 125 ELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSE 177


>U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical
           protein F09F7.3 protein.
          Length = 1154

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 348 VLPTECRQRAATYKGELKIRVTLCIDGRSV-TIERSLGYLPIMIKSKMCHLADLS 509
           + P ECR R  TY   + + +      + V   +  +G +PIM++S  C L DL+
Sbjct: 100 ITPQECRLRDMTYSAPISVDIEYTRGNQRVFKKDLIIGRMPIMLRSSKCILRDLA 154


>Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical
           protein C47E8.5 protein.
          Length = 702

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -3

Query: 356 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFTTRNSNS 243
           WEDHL    + + G + F    F+     FDLF  + S +
Sbjct: 291 WEDHLAVKHFSVEGQLEFRALLFVPQRAPFDLFENKKSKN 330


>AY037802-1|AAK94767.1|  669|Caenorhabditis elegans GLY-2 protein.
          Length = 669

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = +1

Query: 145 NPYLQSLGAPH---IDSFNYM-LDDGLKFAIADLLPSEF 249
           NPY++ +G PH   +D FN + L++ +K AI+ L P  F
Sbjct: 493 NPYMEKIGEPHVITVDIFNELELEEAIKRAIS-LKPKHF 530


>AY037800-1|AAK94765.1|  661|Caenorhabditis elegans GLY-2 protein.
          Length = 661

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = +1

Query: 145 NPYLQSLGAPH---IDSFNYM-LDDGLKFAIADLLPSEF 249
           NPY++ +G PH   +D FN + L++ +K AI+ L P  F
Sbjct: 485 NPYMEKIGEPHVITVDIFNELELEEAIKRAIS-LKPKHF 522


>AF154122-1|AAF74523.1|  669|Caenorhabditis elegans
           N-acetylglucosaminyltransferase V protein.
          Length = 669

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = +1

Query: 145 NPYLQSLGAPH---IDSFNYM-LDDGLKFAIADLLPSEF 249
           NPY++ +G PH   +D FN + L++ +K AI+ L P  F
Sbjct: 493 NPYMEKIGEPHVITVDIFNELELEEAIKRAIS-LKPKHF 530


>AC006625-9|AAK68273.1|  669|Caenorhabditis elegans Glycosylation
           related protein 2 protein.
          Length = 669

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = +1

Query: 145 NPYLQSLGAPH---IDSFNYM-LDDGLKFAIADLLPSEF 249
           NPY++ +G PH   +D FN + L++ +K AI+ L P  F
Sbjct: 493 NPYMEKIGEPHVITVDIFNELELEEAIKRAIS-LKPKHF 530


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,814,220
Number of Sequences: 27780
Number of extensions: 346975
Number of successful extensions: 724
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)