Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0302.Seq
         (740 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      24   1.5  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    22   4.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.9  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   7.9  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 402 GGMFISRSTVRTQEYLRLHTLGKAMGIPSEVLDP 503
           GG F   STV T   LR +     +G   + LDP
Sbjct: 108 GGCFSGESTVLTSTGLRRNLSSLQIGEKIQALDP 141


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 430 FVHKSIYVFILWVKQWESPVKCWTLM 507
           F+  ++++FILWV    +   C T++
Sbjct: 151 FIFDNVWLFILWVGILSTIFLCDTIL 176


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 596 ACSALVQGC*EERCKGLRRLFRLLTFHYSHNLLRK 700
           AC  +     EE  + L+ +FRL     SH ++R+
Sbjct: 537 ACGTMWHETPEEMMEFLKSVFRLDQDQCSHRIVRE 571


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 596 ACSALVQGC*EERCKGLRRLFRLLTFHYSHNLLRK 700
           AC  +     EE  + L+ +FRL     SH ++R+
Sbjct: 537 ACGTMWHETPEEMMEFLKSVFRLDQDQCSHRIVRE 571


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 344 SRISKQFYFQIARSKGP 294
           S IS+ FY+  A S GP
Sbjct: 59  SEISENFYYLPAMSTGP 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,266
Number of Sequences: 336
Number of extensions: 3828
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)