Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0302.Seq
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1035 + 33659965-33660155,33660992-33661066,33661634-336616...    30   2.2  
01_02_0126 + 11370869-11370987,11371914-11371955,11372449-11372512     28   9.0  

>02_05_1035 +
           33659965-33660155,33660992-33661066,33661634-33661670,
           33662415-33662487,33662635-33662801
          Length = 180

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 397 TMEACSYQEARFVHKSIYVFILWVKQWESPVKCW 498
           TM   SYQ+  + H +  +++ W K +  P + W
Sbjct: 85  TMHLRSYQQGSWHHPNQGLYVYWAKSFAQPARLW 118


>01_02_0126 + 11370869-11370987,11371914-11371955,11372449-11372512
          Length = 74

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = +1

Query: 505 MSAENLSTVGPISVQNGSLRNGRRYYRSGDGLQCACSRLLRRTVQRFTKTVPVVDVSLFA 684
           M+A  L T    S+    L+ G +  R  +       +   R V  FT T P  D++LFA
Sbjct: 5   MTATTLETTLAYSITATVLQRGWKMLRREERETMISMKGTGREVI-FTNTTPHKDIALFA 63

Query: 685 QPASEI 702
            P+S I
Sbjct: 64  YPSSPI 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,433,521
Number of Sequences: 37544
Number of extensions: 427761
Number of successful extensions: 1057
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)