Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0302.Seq
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)             106   2e-23
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)             30   1.7  
SB_21018| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_7589| Best HMM Match : Ras (HMM E-Value=0)                          29   4.0  
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)                 29   4.0  
SB_28516| Best HMM Match : Propep_M14 (HMM E-Value=3.6)                29   5.2  
SB_41862| Best HMM Match : POR_N (HMM E-Value=3.5)                     28   9.1  

>SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score =  106 bits (255), Expect = 2e-23
 Identities = 62/163 (38%), Positives = 86/163 (52%), Gaps = 1/163 (0%)
 Frame = +3

Query: 255 LTSGTTWHTAGMVWSLRPCDLEVKLLRDSRTVYSALAKEVDDYAGWINNGGMFISRSTVR 434
           LTSGTTWH+AG++W LRP D EV+++  +R +  +L +E     GWI NGG+FI+ +  R
Sbjct: 143 LTSGTTWHSAGLLWRLRPSDQEVEIIGHTRDLAKSLEEETGVSPGWIENGGLFIANNKER 202

Query: 435 TQEYLRLHTLGKAMGIPSEVLDPHERRKSFHCW-THQRSKWLFTQRKTVLSIRRWLAVRL 611
             EY RL TLG   GI S VLDP   ++ +           L++     +    W A  L
Sbjct: 203 LDEYKRLMTLGHCYGIDSHVLDPKATKELYPLMNVKDLYGTLYSPGDGTIDPAGW-ASAL 261

Query: 612 FKVAKKNGAKVYEDCSGC*RFIIRTTCFGNKEVTGVHTDRGFI 740
            + A K GAKV+E+C            FG   V+G+ T  G I
Sbjct: 262 TRGATKRGAKVFENCPVT-GITTEVDDFGVLRVSGIDTVAGHI 303


>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
          Length = 772

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 531 WTHQRSKWLFTQRKTVLSIRRWLAVR 608
           W H + +W+ T  K V ++ +W+ +R
Sbjct: 379 WGHTQVRWVVTHNKWVFTLNKWVVIR 404



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 531 WTHQRSKWLFTQRKTVLSIRRWLAVR 608
           W    +KW+FT  K V+   +W+ +R
Sbjct: 386 WVVTHNKWVFTLNKWVVIRNKWVVIR 411


>SB_21018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 716

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
 Frame = +3

Query: 342 RTVYSALAKEVDDYAGWINNGGMFISRSTVRTQEYLRLHTLGKAM--GIPSEVLDPHERR 515
           R VY  L K++ D     +  G    RSTV TQ     H +G+A+  G  S+++   +  
Sbjct: 589 RCVYKYLKKQLFDLLD-DSQHGFLQGRSTV-TQLLAFYHQIGQALDRGPQSDIVFL-DLA 645

Query: 516 KSFHCWTHQRSKWLFTQRKTVLSIRRWL 599
           K+F   +HQR  W  +    + ++ +WL
Sbjct: 646 KAFDSVSHQRLLWKLSHYGILGNLLQWL 673


>SB_7589| Best HMM Match : Ras (HMM E-Value=0)
          Length = 640

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 28  VPKKMFKVIRDGSVRVRASNFLKRSNTIRFSSGAGS 135
           VP++MFK++  G   V  S+F+ R    RF S   S
Sbjct: 438 VPERMFKIVLAGDAAVGKSSFILRLCRNRFHSALNS 473


>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
          Length = 1632

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/72 (23%), Positives = 34/72 (47%)
 Frame = +1

Query: 499  TLMSAENLSTVGPISVQNGSLRNGRRYYRSGDGLQCACSRLLRRTVQRFTKTVPVVDVSL 678
            ++  A N S   P    NG   +   Y++S      +C+++L   +QR T T  +   ++
Sbjct: 1016 SVRKASNSSPPPPPQKSNGEKPDEMEYFKSS-----SCTKILSSLMQRETMTTGIATSTM 1070

Query: 679  FAQPASEIRK*P 714
               PA++ ++ P
Sbjct: 1071 ATNPAADSQQQP 1082


>SB_28516| Best HMM Match : Propep_M14 (HMM E-Value=3.6)
          Length = 184

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +3

Query: 387 GWINNGGMFISRSTVRTQEYLRLHTLGKAMGIPSEVLDPHERRKSFHCWTHQRSKWLFTQ 566
           GW+ +G +  S++T++    L+   L     +  +V DP  R    H    Q S  +   
Sbjct: 45  GWVLDGRV-PSQATLKLTFALKQRNLAALEKLFWQVSDPDSRFYGRHWSLEQLSNLISPS 103

Query: 567 RKTVLSIRRWL 599
           +KT   I++WL
Sbjct: 104 KKTESVIKKWL 114


>SB_41862| Best HMM Match : POR_N (HMM E-Value=3.5)
          Length = 994

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 538 ISVQNGSLRNGRRYYRSGDGLQCACSRLL 624
           + V  G+ R+GRR   S DG +  CSR L
Sbjct: 214 LRVAAGACRSGRRLRGSSDGREGVCSRYL 242


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,710,848
Number of Sequences: 59808
Number of extensions: 490281
Number of successful extensions: 1344
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)