Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0302.Seq
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82093-6|CAB05014.1|  256|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical...    28   6.0  
U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein...    28   8.0  
U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein...    28   8.0  

>Z82093-6|CAB05014.1|  256|Caenorhabditis elegans Hypothetical
           protein ZK39.7 protein.
          Length = 256

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 231 CGFIRKS*LTSGTTWHTAGMVWSLRPCDLEVKLLRDSRTVYSALAKEVDDYAGWINN 401
           CG +     T G+T  TAG+VW+    D +    +    + ++ A  + D   W  N
Sbjct: 140 CGSLNSFQWTDGSTTGTAGLVWNTNQPDNKDSRSQQCLVLLASRASSIQDKWTWYAN 196


>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
           protein F53G12.3 protein.
          Length = 1503

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query: 315 LEVKLLRDSRTVYSALAKEVDD--YAGWINN 401
           LE+K+     T++SAL +E +   Y GW NN
Sbjct: 17  LEIKVQFSKETLFSALQQEAETQRYDGWYNN 47


>U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein
           10, isoform b protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 255 LTSGTTWHTAGMVWSLRPCDLEVKLL 332
           L +GTTW  +GM   +  CD +V+++
Sbjct: 237 LLNGTTWEQSGMFPRVSLCDFDVRVM 262


>U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein
           10, isoform a protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 255 LTSGTTWHTAGMVWSLRPCDLEVKLL 332
           L +GTTW  +GM   +  CD +V+++
Sbjct: 237 LLNGTTWEQSGMFPRVSLCDFDVRVM 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,348,660
Number of Sequences: 27780
Number of extensions: 365173
Number of successful extensions: 849
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)