Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0302.Seq
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.0  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.2  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 435 TQEYLRLHTLGKAMGIPSEVLDPHER 512
           +Q YL +H+    + IPS  +D  ++
Sbjct: 377 SQNYLTVHSFPSTLNIPSVKIDEDQK 402


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 530 LDPSAFKMALYATED 574
           LDP+  K+AL+AT+D
Sbjct: 596 LDPNLPKLALFATKD 610


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 5/18 (27%), Positives = 14/18 (77%)
 Frame = +1

Query: 592 DGLQCACSRLLRRTVQRF 645
           +G+QC+C++ +  + ++F
Sbjct: 81  EGMQCSCNKCIGCSAEKF 98


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 457 ILWVKQWESPVKCWTLMSAENLSTVGPIS 543
           I W+K  +SP      +++ N+S + P S
Sbjct: 643 ISWLKDGQSPFPLPPNLASANISQLDPYS 671


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,685
Number of Sequences: 438
Number of extensions: 4888
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)