Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0302.Seq
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52600.1 68418.m06531 myb family transcription factor (MYB82)...    30   1.4  
At1g04680.1 68414.m00465 pectate lyase family protein similar to...    29   2.4  
At1g01680.1 68414.m00086 U-box domain-containing protein               29   2.4  
At5g04910.1 68418.m00517 hypothetical protein ; expression suppo...    29   4.3  
At2g32680.1 68415.m03995 disease resistance family protein conta...    28   7.5  
At2g21400.1 68415.m02547 lateral root primordium (LRP) protein-r...    27   9.9  
At1g55610.1 68414.m06365 protein kinase family protein contains ...    27   9.9  

>At5g52600.1 68418.m06531 myb family transcription factor (MYB82)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to  cDNA putative transcription factor
           (MYB82) mRNA, partial cds GI:3941515
          Length = 201

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 507 HEGPTLHWGFPL-LYPKYEDVNTLVYEPCF 421
           H G  +H G PL L   Y D NTLV++PCF
Sbjct: 164 HFGYDVHVGSPLPLISHYPD-NTLVFDPCF 192


>At1g04680.1 68414.m00465 pectate lyase family protein similar to
           pectate lyase GP:14531296 from [Fragaria x ananassa]
          Length = 431

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 525 HCWTHQRSKWLFTQRKTVLSIRRWLAVRLFKVAKKNGAKVYEDCSGC 665
           H     R  W+  +R  V+ +++ L V  FK     GA V+    GC
Sbjct: 140 HAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGC 186


>At1g01680.1 68414.m00086 U-box domain-containing protein
          Length = 308

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +3

Query: 309 CDLEVKLLRDSRTVYSALAKEVDDYAGWINNGGMFISRSTVRTQEYLRLHTL 464
           C + ++++RD          E +++  W+ +GG    R++ +T + L  H L
Sbjct: 239 CPISMEIMRDPHVAADGFTYEAEEFRKWLRSGG----RTSPKTNKPLENHNL 286


>At5g04910.1 68418.m00517 hypothetical protein ; expression
           supported by MPSS
          Length = 217

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +3

Query: 324 KLLRDSRTVYSALAKEVDDYAGWINN---GGMFISR--STVRTQEYLRLHTLGKAMGIPS 488
           KL  +  T +S  +K+V +      N   G   +++  S ++TQE  +LH + K  G PS
Sbjct: 83  KLCSEITTEFSECSKQVREMESLFLNPEVGRADLAKLLSDIQTQEKQKLHLVLKKAGRPS 142

Query: 489 EVLDPHERRK 518
           E +  HE  K
Sbjct: 143 ERMLTHENCK 152


>At2g32680.1 68415.m03995 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 890

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -3

Query: 339 NLEAILLPNRTVEGTIPFRRC-AMSFRLLISSF**NRIHASL-R*LVERVTARYASPDNN 166
           NLE + L N  +EG+IP   C   S R L  S   NR+   L R  V   + ++ S  NN
Sbjct: 529 NLELVYLRNNNLEGSIPDALCDGASLRTLDVSH--NRLTGKLPRSFVNCSSLKFLSVINN 586

Query: 165 NI 160
            I
Sbjct: 587 RI 588


>At2g21400.1 68415.m02547 lateral root primordium (LRP)
           protein-related similar to lateral root primordium 1
           (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
           profile PF05142: Domain of unknown function (DUF702)
          Length = 174

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 510 RRKSFHCWTHQRSKWLFTQRKT 575
           + K+FHC TH +S W+   R++
Sbjct: 30  KSKAFHCQTHIKSTWVPAYRRS 51


>At1g55610.1 68414.m06365 protein kinase family protein contains
           Prosite:PS00107: Protein kinases ATP-binding region
           signature
          Length = 1166

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -3

Query: 354 CIQFSNLEAILLPNRTVEGTIP--FRRCAMSFRLLISS 247
           C++  NLE ++L N  + G+IP    RC     + +SS
Sbjct: 471 CVKGGNLETLILNNNLLTGSIPESISRCTNMIWISLSS 508


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,314,801
Number of Sequences: 28952
Number of extensions: 338097
Number of successful extensions: 825
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)