Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0301.Seq
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   1.0  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   1.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   5.5  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   9.7  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
 Frame = +3

Query: 189 YSSTVHFYNIKGSLGQAQMLSVAT--WATCSCPSWRGSWRGSRTAARCSP 332
           Y  T+  Y + G+  Q    +     W+ C C    G  RG  TA R  P
Sbjct: 123 YHFTLELYTVLGAACQVCTPNATNTVWSHCQCVLADGVERGILTANRMIP 172


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
 Frame = +3

Query: 189 YSSTVHFYNIKGSLGQAQMLSVAT--WATCSCPSWRGSWRGSRTAARCSP 332
           Y  T+  Y + G+  Q    +     W+ C C    G  RG  TA R  P
Sbjct: 123 YHFTLELYTVLGAACQVCTPNATNTVWSHCQCVLADGVERGILTANRMIP 172


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = -2

Query: 391 HDSLRLLVLSEHGGNLLQQGGEHRAAVLDPLQEPLQDGHEHVAHVA 254
           H    ++   + G N+ QQG  H+     P+Q+    G +   + A
Sbjct: 183 HQQQHMMYGGQQGANMHQQGPPHQQ---PPIQQQPNQGQQPPGNTA 225


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = -2

Query: 391 HDSLRLLVLSEHGGNLLQQGGEHRAAVLDPLQEPLQDGHEHVAHVA 254
           H    ++   + G N+ QQG  H+     P+Q+    G +   + A
Sbjct: 185 HQQQHMMYGGQQGANMHQQGPPHQQ---PPIQQQPNQGQQPPGNTA 227


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 93  LVDAFCENILDIIRELPKDEQGKSYTRVGFITYS 194
           LV A+  + LD+  E P+++  K  +++G I +S
Sbjct: 142 LVKAYGFDGLDLAWEFPENKPKKIRSKLGSIWHS 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,014
Number of Sequences: 336
Number of extensions: 2539
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)