Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0301.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   5e-16
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)                 44   2e-04
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_25272| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  

>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 40/70 (57%), Positives = 51/70 (72%)
 Frame = +2

Query: 218  QGQLRPSPNAVGGDVGDMFVPILEGFLERVEDSGSVLASLLEQIPAMFRENKETETVMLP 397
            +G L      V  DV DMFVP+L+GFL  V+++ SV+ SLLEQIP MF E ++TETV+ P
Sbjct: 920  KGNLAQPQMMVVSDVDDMFVPLLDGFLVSVDEARSVIESLLEQIPLMFAETRDTETVLGP 979

Query: 398  AVQAGLEALK 427
             VQAG+EALK
Sbjct: 980  VVQAGIEALK 989



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 596  CSVAGVAVQLFACNNAYIXXATWGQL 673
            C  AGVAV LF   NAY+  AT G +
Sbjct: 1006 CVEAGVAVDLFLFPNAYVDVATIGAI 1031


>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
          Length = 942

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 22/57 (38%), Positives = 35/57 (61%)
 Frame = +3

Query: 87  SGLVDAFCENILDIIRELPKDEQGKSYTRVGFITYSSTVHFYNIKGSLGQAQMLSVA 257
           +G +   C+ + + + +LP    G S T VGF+++ STVHFY++K  L Q QM  V+
Sbjct: 453 AGYLHVACKLLKENLEKLP----GDSRTLVGFLSFDSTVHFYSLKPKLTQPQMFIVS 505



 Score = 35.1 bits (77), Expect = 0.055
 Identities = 17/67 (25%), Positives = 37/67 (55%)
 Frame = +2

Query: 257 DVGDMFVPILEGFLERVEDSGSVLASLLEQIPAMFRENKETETVMLPAVQAGLEALKAAD 436
           D+ D+F+P  +  L  +++S  ++  LL+ +P MF  ++   +    A+Q+ L+   +  
Sbjct: 506 DLDDIFLPAPDDLLVNLKESKELIYQLLDSLPTMFSGSRNIHSAAGAALQSALKLCVSLQ 565

Query: 437 TAGQLFV 457
           +A +L V
Sbjct: 566 SALKLCV 572


>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1880

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/55 (38%), Positives = 24/55 (43%)
 Frame = +1

Query: 253 WRRGRHVRAHPGGVPGEGRGQRLGARLPAGADSRHVQREQGDGDCHAAGRSGWSG 417
           WRRG   R   GG  G G G+  GA    G   R   R +G G+    GR G  G
Sbjct: 119 WRRGGVQRGGRGGWRGRGGGEGNGA---GGGIGRGGGRGRGGGEGGWGGRGGNGG 170


>SB_25272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 28/83 (33%), Positives = 36/83 (43%)
 Frame = +2

Query: 200 RSLLQHQGQLRPSPNAVGGDVGDMFVPILEGFLERVEDSGSVLASLLEQIPAMFRENKET 379
           ++LLQ QG  +PSPN   GD  +   P  E +LE    S     SLL  I  +  E KET
Sbjct: 12  KTLLQRQGVPKPSPNKFAGDSSEF--PTFE-WLEEKGFSEKEKISLL--ISFVQGEAKET 66

Query: 380 ETVMLPAVQAGLEALKAADTAGQ 448
                PA        K ++   Q
Sbjct: 67  IEHWPPAQVVKASVRKISEVVDQ 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,321,742
Number of Sequences: 59808
Number of extensions: 373187
Number of successful extensions: 1452
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1448
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)