Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0300.Seq
         (683 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41326 Cluster: Minor nucleoprotein VP30; n=11; Lake Vi...    35   2.1  
UniRef50_A4YWR1 Cluster: Putative ABC transporter, permease prot...    33   6.5  

>UniRef50_P41326 Cluster: Minor nucleoprotein VP30; n=11; Lake
           Victoria marburgvirus|Rep: Minor nucleoprotein VP30 -
           Lake Victoria marburgvirus (strain Popp-67) (MARV)
           (Marburg virus)
          Length = 281

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 577 FTNHHPRLLPLSSTISGXSPSVTTHLP 657
           +TNHHPR   +SST S    S T H+P
Sbjct: 31  YTNHHPRARSMSSTRSSAESSPTNHIP 57


>UniRef50_A4YWR1 Cluster: Putative ABC transporter, permease
           protein; n=1; Bradyrhizobium sp. ORS278|Rep: Putative
           ABC transporter, permease protein - Bradyrhizobium sp.
           (strain ORS278)
          Length = 191

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 288 ACRRGCRTTAGSCYGRTAASCRCCGCSWPAFLAVAAISISPIC 416
           A RRGCR+  G C+  T+ + RCC  S P+  + +AI     C
Sbjct: 95  ARRRGCRS--GRCWSATSCATRCCRSS-PSLRSTSAICSEASC 134


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 399,603,504
Number of Sequences: 1657284
Number of extensions: 5686207
Number of successful extensions: 14626
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14617
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)