Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0299.Seq
         (828 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    25   0.73 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    24   1.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   3.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   3.9  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   6.8  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 257 WTKDGKEIVKSYFPI-QFRVIFTEQTVKLINKRDHHALKLIDQ 382
           +T   KE++   F + +FR+    Q  K+I + DH ALK + +
Sbjct: 642 YTTTEKELLGVIFALHKFRIYI--QVTKIIIRTDHQALKFLSR 682


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 353 DHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENKQSILPRSCPPKTTVPE 520
           +H+  +   Q N+N  + G+ K      +   F   + +  +I  R C PKT VPE
Sbjct: 108 EHYYNQKTLQANNNDASNGNLKFSIDNILKADFGRRITDPINI--RKCKPKTVVPE 161


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 431 CWFCLWSHRMQFCCGFV 381
           C F +++  + FCC F+
Sbjct: 171 CAFIIFTMHLLFCCAFI 187


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 420 TKPARKSPGSLPPCWKTN 473
           T PA   PG LP  W+ N
Sbjct: 52  TNPAFFHPGLLPLAWQAN 69


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 438 TFLLVLSLESPNAILLWFCWSINLRA*WSLLFMSLTV 328
           T+L+    E  +  +LW C S N      +L +S TV
Sbjct: 242 TYLIWTIYEMYHLAILWSCTSTNCPRFLIMLALSYTV 278


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,078
Number of Sequences: 336
Number of extensions: 4256
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)