Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0299.Seq
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   1.9  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    26   5.7  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    26   7.5  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   7.5  
SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49 |...    26   7.5  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    26   7.5  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   9.9  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   9.9  

>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 102 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 218
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = -3

Query: 286 FDDFLSILCPYW*AKSMVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIY 107
           FD+ + + CPY   K+++ LL F           S   SF +   ++ A+ +SP  +L+ 
Sbjct: 362 FDNSMVLWCPYGKNKTLICLLNFQ----------SSLLSFEWISIISRALLFSPRPSLLI 411

Query: 106 SCSA 95
           S  A
Sbjct: 412 SVPA 415


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 17/73 (23%), Positives = 33/73 (45%)
 Frame = -3

Query: 349 FVYELDSLLGEDHSKLDGEVRFDDFLSILCPYW*AKSMVFLLPFSIRRFTASLITSPFFS 170
           F+ E+D LL   + K + E+    FLS +  Y        +  F ++R     + SP   
Sbjct: 16  FLAEIDELLTIPYEKNELEIGVSKFLSFINKY---GEPYLITEFQLQRCMEKFLNSPL-- 70

Query: 169 FRYSEHLAIAVSY 131
           ++  E+  +++ Y
Sbjct: 71  YQLDENAVLSIFY 83


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 338 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 430
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


>SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 20/84 (23%), Positives = 37/84 (44%)
 Frame = +2

Query: 275 EIVKSYFPIQFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFT 454
           +++K   P++ R I  ++    I        K    +N  ++   D  D  S+   W  +
Sbjct: 94  DLLKLPIPVRRRKIMRQEVPNTIADLADILNKEKFPENSVRLQLSDKSD--SEYADWPPS 151

Query: 455 PVLENKQSILPRSCPPKTTVPEAR 526
             +++++  L R    KTTV EAR
Sbjct: 152 VQIDSEEIKLSRGFREKTTVDEAR 175


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = -3

Query: 238 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 59
           M F    ++   T   + +PF   R+  HL      S +T+ +Y+ +  T     ++++ 
Sbjct: 1   MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57

Query: 58  EASAHTARTKA 26
             +A  A T A
Sbjct: 58  NGAAKEAATAA 68


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
 Frame = -3

Query: 196 SLITSPFFSFRYSEHLAIAVSYSP------MTTLIYSCSASTSSVLGASVALEASAHTAR 35
           +LI SP  S   S ++   V  S       M  L+Y+ S + +S+  A + L+  + T  
Sbjct: 284 ALIYSPDLSMDSSNYVQSVVQTSSSILNYSMKKLLYNASFAITSLFNALLILDPKSSTFI 343

Query: 34  TKANKVSLI 8
            + N VSLI
Sbjct: 344 FQENVVSLI 352


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 388  VLLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 272
            V+L+  + G +  +   L  LL +D +++  +V FDDF+
Sbjct: 1284 VVLLQDIHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,038
Number of Sequences: 5004
Number of extensions: 68040
Number of successful extensions: 251
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)