Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0299.Seq
(828 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0259 - 1996427-1998772 31 1.1
04_04_0947 - 29583775-29583931,29584030-29584256 31 1.5
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 3.4
12_01_0294 + 2230539-2230870,2232179-2232574,2232676-2232834,223... 29 3.4
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211... 29 3.4
01_07_0227 + 42144437-42144446,42145059-42145428,42145528-421456... 29 4.5
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 29 6.0
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 29 6.0
01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749... 29 6.0
03_02_0950 + 12661008-12662312,12662403-12662576 28 7.9
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 314 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 418
I ++ V++ N HHALKLI + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>04_04_0947 - 29583775-29583931,29584030-29584256
Length = 127
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 146 RQML*ISEGKEGRGYQGSREASDRKRQEEHHGLRLPVW 259
++ + I E +E R Q R +R+RQ++ R+PVW
Sbjct: 88 QEQIEIDEAREQRSKQTGRAEQERQRQQKASHPRIPVW 125
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 382 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 296
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>12_01_0294 +
2230539-2230870,2232179-2232574,2232676-2232834,
2233109-2233505
Length = 427
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 167 EGKEGRGYQGSREASDRKRQEEHHGLRLPVWTKDGKEIVKSYFPIQFRV 313
EG E + R+A R Q H LR V T + I ++Y P+ FR+
Sbjct: 249 EGNEVKMEMTVRDAYQRSMQTLFHWLRNEVNTNKTQIIFRTYAPVHFRL 297
>03_01_0273 -
2107778-2108772,2108857-2109043,2109121-2110575,
2110670-2111251
Length = 1072
Score = 29.5 bits (63), Expect = 3.4
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Frame = -2
Query: 251 VGEVHGVPLAVFDQTLHGFLDNLSLLFLQIFRAFGDSG-----------LVFTNDDTHIQ 105
V E G+P+AV D + D + +FL+ G L N D+ I
Sbjct: 705 VDEFFGIPVAVRDDLVQDLADGMEAIFLEYISFLTSCGSKQSYLPSLPPLTRCNQDSKII 764
Query: 104 LLCQYVISSWCKCGVRSQRTHGEDEGK 24
L + + C+ V S R HG +G+
Sbjct: 765 RLWKKAATP-CRAPVSSPRAHGHHQGQ 790
>01_07_0227 +
42144437-42144446,42145059-42145428,42145528-42145649,
42145767-42145935,42146236-42146545,42146742-42146825,
42147012-42147083,42147780-42147821,42147931-42148020,
42148106-42148213,42148292-42148384,42148540-42148619,
42148701-42148953,42151222-42151236
Length = 605
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 602 GCFERWSAVAITVDDTVHPLEPFVFIELQVLLSSVDM 492
G + W+ + + VDD V P + ++ LL S DM
Sbjct: 318 GAYAHWNKIKLNVDDIVRQNHPTICSDIWHLLGSSDM 354
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 599 CFERWSAVAITVDDTVHP 546
C RWS VA+T D T HP
Sbjct: 460 CRARWSEVALTFDQTDHP 477
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 599 CFERWSAVAITVDDTVHP 546
C RWS VA+T D T HP
Sbjct: 217 CRARWSEVALTFDQTDHP 234
>01_06_0129 -
26770543-26770720,26774592-26774719,26774829-26774933,
26775661-26775788,26777332-26777433,26778760-26778861,
26779777-26779852,26779971-26780059,26780177-26780230,
26780482-26780614,26780671-26780797,26781590-26781648
Length = 426
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 359 HALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENKQ 475
H L D NHN + + K TS K + +PV E ++
Sbjct: 31 HLLAFYDIHNHNLLDYSTEKPLTSVKTFFNNSPVRETRE 69
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 87 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 188
+VL+ + +GEY+ AIA CS+ L++ K V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,903,297
Number of Sequences: 37544
Number of extensions: 462274
Number of successful extensions: 1395
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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