Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0299.Seq
         (828 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A...    29   5.0  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   5.0  
At1g62250.2 68414.m07023 expressed protein                             29   5.0  
At1g62250.1 68414.m07022 expressed protein                             29   5.0  
At1g53910.1 68414.m06137 AP2 domain-containing protein RAP2.12 (...    29   5.0  
At3g12070.2 68416.m01503 geranylgeranyl transferase type II beta...    28   8.7  
At3g12070.1 68416.m01502 geranylgeranyl transferase type II beta...    28   8.7  
At2g25290.1 68415.m03025 octicosapeptide/Phox/Bem1p (PB1) domain...    28   8.7  
At2g24680.1 68415.m02947 transcriptional factor B3 family protei...    28   8.7  
At1g79720.1 68414.m09298 aspartyl protease family protein contai...    28   8.7  

>At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A19)
           Identical to Cytochrome P450 (SP:Q9T0K0) [Arabidopsis
           thaliana]; similar to cytochrome P450LXXIA1, Persea
           americana, M32885
          Length = 490

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 364 GVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 272
           G  +P +  +D + G+DH   + + RFD+FL
Sbjct: 221 GEYIPSLSWIDKIRGQDHKMEEVDKRFDEFL 251


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +2

Query: 281 VKSYFPIQFRVIFTEQTVKLINKR-DHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTP 457
           V S + +QF V  +   +  IN R D HAL ++ + + +K+ F D    +    +  F P
Sbjct: 76  VPSVYELQFAVPMSGAVLNNINPRLDAHALSVLLRHSESKLVFVDHHSSSLVLEAVSFLP 135

Query: 458 VLENKQSIL 484
             E  + ++
Sbjct: 136 KDERPRLVI 144


>At1g62250.2 68414.m07023 expressed protein
          Length = 223

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 19  LCLPSSSPCVRWLLTPHLHQELMTYWQSSCI*VSSLVNTRPLS 147
           LC P  +  +RW  TP +  E+++ W+  C  +++    R ++
Sbjct: 181 LCTPQPT-VIRWSSTPSVSDEILSKWRGFCAVIANAYYIRGMA 222


>At1g62250.1 68414.m07022 expressed protein
          Length = 267

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 19  LCLPSSSPCVRWLLTPHLHQELMTYWQSSCI*VSSLVNTRPLS 147
           LC P  +  +RW  TP +  E+++ W+  C  +++    R ++
Sbjct: 181 LCTPQPT-VIRWSSTPSVSDEILSKWRGFCAVIANAYYIRGMA 222


>At1g53910.1 68414.m06137 AP2 domain-containing protein RAP2.12
           (RAP2.12) identical to AP2 domain containing protein
           GI:2281649 from [Arabidopsis thaliana]
          Length = 358

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 170 GKEGRGYQGSREAS-DRKRQEEHHGLRLPVWTKDGKEI 280
           GK+  G  G  E S +RKR+ ++ G+R   W K   EI
Sbjct: 103 GKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEI 140


>At3g12070.2 68416.m01503 geranylgeranyl transferase type II beta
           subunit, putative / RAB geranylgeranyltransferase beta
           subunit, putative similar to geranylgeranyl transferase
           type II beta subunit SP:P53611 [GI:1552549] [Homo
           sapiens]
          Length = 317

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 629 HGRPQGYPVGCFERWSAVAITVDDTVHPLEPFVFIELQVLLSSVDM 492
           +GRP+  P  C+  W   ++ + D VH +E    ++   +L S DM
Sbjct: 220 NGRPEKLPDVCYSWWVLSSLIMIDRVHWIEKAKLVKF--ILDSQDM 263


>At3g12070.1 68416.m01502 geranylgeranyl transferase type II beta
           subunit, putative / RAB geranylgeranyltransferase beta
           subunit, putative similar to geranylgeranyl transferase
           type II beta subunit SP:P53611 [GI:1552549] [Homo
           sapiens]
          Length = 317

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 629 HGRPQGYPVGCFERWSAVAITVDDTVHPLEPFVFIELQVLLSSVDM 492
           +GRP+  P  C+  W   ++ + D VH +E    ++   +L S DM
Sbjct: 220 NGRPEKLPDVCYSWWVLSSLIMIDRVHWIEKAKLVKF--ILDSQDM 263


>At2g25290.1 68415.m03025 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein / tetratricopeptide repeat
           (TPR)-containing protein low similarity to SP|Q99614
           Tetratricopeptide repeat protein 1 {Homo sapiens};
           contains Pfam profiles PF00564: PB1 domain, PF00515: TPR
           Domain
          Length = 697

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 108 YMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQ 254
           YM + +GEY  AI +C+  L E      K  +KR       N +DFA++
Sbjct: 100 YMQMGLGEYPNAINECNLAL-EASPRFSKALLKRARCYEALNKLDFAFR 147


>At2g24680.1 68415.m02947 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 851

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 477 LCLFSNTGVNFQETFLLVLSLESPNAILLWFC 382
           +C+FSN   NF   F+ +L  ES  + LL+ C
Sbjct: 300 VCIFSNLYSNFSLVFISILFGESVFSRLLYLC 331


>At1g79720.1 68414.m09298 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 484

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +2

Query: 311 VIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENKQ 475
           V    QT+K  N    + L  ++      ++FG+     +   S  +TP+++N Q
Sbjct: 274 VSLVSQTLKTFNGVFSYCLPSLEDGASGSLSFGNDSSVYTNSTSVSYTPLVQNPQ 328


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,438,040
Number of Sequences: 28952
Number of extensions: 371872
Number of successful extensions: 1137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)