Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0298.Seq
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    28   1.4  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   2.5  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.3  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   7.5  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   7.5  
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    26   7.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   7.5  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.5  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   10.0 

>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 223 RLSRVGVRA--EQDTGDLESIINQIFTSAXPRRNCSRSRSLVSLIGLH 360
           RLS   +R     D  DLE ++ ++ +   PR +   S+ LV + GL+
Sbjct: 290 RLSGANIRVYKHNDMTDLERVLREVISQGQPRTHRPYSKILVVIEGLY 337


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 433 HSPSWPSEVWHERSSFVETPGTRVDGALSAT 341
           HS ++P+E+W  R    E P  + D  L+ T
Sbjct: 45  HSLTFPTEIWETRDGLFEEPVGKGDSHLNHT 75


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 552 LPTRDRQQIPSRPGRRP 602
           LP+R    +PSRPG RP
Sbjct: 114 LPSRGTPSLPSRPGSRP 130


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 352 GLHRPWCL 375
           GLHRPWCL
Sbjct: 685 GLHRPWCL 692


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 464  IGRIAQVIVDALPFLAVGGLARKVIVRRDARHQGRWSPI 348
            +GR+A+V++D    L   G A +  + R +R  G ++P+
Sbjct: 1313 LGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLYAPL 1350


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 494 DVCSVSDNGVIGRIAQVIVDALPFLAV 414
           ++  +  NG++ RI QV+ D L +L++
Sbjct: 304 EIDEIGVNGIVERIKQVVGDTLVYLSI 330


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 464  IGRIAQVIVDALPFLAVGGLARKVIVRRDARHQGRWSPI 348
            +GR+A+V++D    L   G A +  + R +R  G ++P+
Sbjct: 1313 LGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLYAPL 1350


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +3

Query: 402 CQTSDGQEGECVNYYLCNAANNTIITDGTNVIDIRVAVARVHRTSTSAVWLPTRDRQQIP 581
           C  ++G    C+     NA N+T   +GTN  +   +      TS S   LPT  +    
Sbjct: 213 CNGTNGTNFTCI-VNASNATNSTFWLNGTNSTNGTNSTNSTSTTSHSLTKLPTSSKSLTT 271

Query: 582 SR 587
           S+
Sbjct: 272 SK 273


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 690 PNLVSPSTSPVVRKATPSGFR 628
           PN +SPST P++  +  S FR
Sbjct: 253 PNRLSPSTQPLLSNSRHSSFR 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,762
Number of Sequences: 5004
Number of extensions: 58070
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)