Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0298.Seq
         (830 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038613-12|AAB92046.3|  328|Caenorhabditis elegans Hypothetical...    31   1.0  
Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical p...    31   1.3  
Z34802-4|CAA84335.4|  365|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AL132862-14|CAB60548.1|  541|Caenorhabditis elegans Hypothetical...    29   3.1  
AF022973-4|AAC25798.1|  314|Caenorhabditis elegans Temporarily a...    28   9.4  

>AF038613-12|AAB92046.3|  328|Caenorhabditis elegans Hypothetical
           protein F42A6.1 protein.
          Length = 328

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 258 VLFCAHADARKPMNRSLYIFGYYSQNITLTISNSQCS 148
           +L+C  +DAR    R   +    S  +TLT+S S+C+
Sbjct: 24  LLWCILSDARNRNRREFLLVASQSVTVTLTVSTSECA 60


>Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical
           protein Y57G11C.5 protein.
          Length = 512

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 649 GNAVRVPPAAALVHWQGLRPGRDGI 575
           G + + PP A+L HW  LR G +GI
Sbjct: 304 GQSQKAPPMASLWHWAHLRVGSEGI 328


>Z34802-4|CAA84335.4|  365|Caenorhabditis elegans Hypothetical
           protein M88.4 protein.
          Length = 365

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +1

Query: 202 DVQASI----HRLSRVGVRAEQDTGDLESIINQIFTSAXPRRNCSRSRSL 339
           DVQ SI    HRL   G+   ++  + E  +NQ   +  P+R+CS+SRS+
Sbjct: 147 DVQRSINDLEHRLFLSGLLVPRNNNNSEGSVNQ--NALRPQRSCSQSRSV 194


>AL132862-14|CAB60548.1|  541|Caenorhabditis elegans Hypothetical
           protein Y73F8A.20 protein.
          Length = 541

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 649 GNAVRVPPAAALVHWQGLRPGRDGI 575
           G + + PP A+L HW  L+ G  GI
Sbjct: 329 GQSQKAPPMASLWHWASLKVGSSGI 353


>AF022973-4|AAC25798.1|  314|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 57 protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 103 TLSRTRKILKPVTSRRA-LRVRYC*CDVLRIISKDVQASIHRLSRVGV 243
           T S+  K  K + ++ + + VRY  CD  R+  +D +  +H L+ V +
Sbjct: 86  TKSKLVKTKKQILNKYSDIEVRYAICDFTRVSYEDYKRLLHSLNEVDI 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,800,466
Number of Sequences: 27780
Number of extensions: 361648
Number of successful extensions: 1190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)