Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0298.Seq
         (830 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19900.1 68414.m02495 glyoxal oxidase-related contains simila...    32   0.41 
At1g75620.1 68414.m08786 glyoxal oxidase-related contains simila...    32   0.54 
At4g01570.1 68417.m00203 pentatricopeptide (PPR) repeat-containi...    30   1.6  
At4g19830.1 68417.m02907 immunophilin / FKBP-type peptidyl-proly...    30   2.2  
At3g44230.1 68416.m04745 hypothetical protein                          28   8.7  

>At1g19900.1 68414.m02495 glyoxal oxidase-related contains
           similarity to glyoxal oxidase precursor [Phanerochaete
           chrysosporium] gi|1050302|gb|AAA87594
          Length = 548

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 584 TPRPETLPMNQGC--GWRNPDGVAFRTTGDVDGETKFGEF 697
           T RP T+  N  C  G   PDGV  +T GD DGE K   F
Sbjct: 101 TIRPLTVQSNTWCSSGSVRPDGVLVQTGGDRDGELKTRTF 140


>At1g75620.1 68414.m08786 glyoxal oxidase-related contains
           similarity to glyoxal oxidase precursor [Phanerochaete
           chrysosporium] gi|1050302|gb|AAA87594
          Length = 547

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 590 RPETLPMNQGC--GWRNPDGVAFRTTGDVDGETK 685
           RP T+  N  C  G   PDG   +T GD+DGE K
Sbjct: 107 RPLTVQSNTWCSSGGVTPDGTLLQTGGDLDGERK 140


>At4g01570.1 68417.m00203 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 805

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 581 WDLLAVSGREPDSRRRCTMNTGHCHSY-IDDVCSV 480
           WD L VSG EPD+     +  G C SY +DD   +
Sbjct: 312 WDELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRI 346


>At4g19830.1 68417.m02907 immunophilin / FKBP-type peptidyl-prolyl
           cis-trans isomerase family protein similar to 70 kDa
           peptidylprolyl isomerase (Peptidylprolyl cis-trans
           isomerase) (PPiase) (Rotamase) (SP:Q43207) [Triticum
           aestivum]; FKBP-type peptidyl-prolyl cis-trans
           isomerase,Synechocystis sp., PIR2:S75144; contains Pfam
           PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type
          Length = 229

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 379 SLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTEQTSSI 501
           SLR    R+  P++   S+ST+  A R    LS+   TSS+
Sbjct: 26  SLRIFASRSSAPSSSSSSSSTVAAASRRSISLSIIAVTSSV 66


>At3g44230.1 68416.m04745 hypothetical protein 
          Length = 204

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 258 VLFCAHADARKPMNRSLYIFGYYSQNITLTISNSQCSS 145
           V+F A  +   P N S  I G Y+ NITL + + Q ++
Sbjct: 120 VVFAAETEDIGPANGSNVISGVYNLNITLLMKHKQIAA 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,950,455
Number of Sequences: 28952
Number of extensions: 339885
Number of successful extensions: 1050
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)