Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0297.Seq
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    29   0.81 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    29   1.1  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   1.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.5  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   4.3  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   4.3  
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    27   4.3  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    26   5.7  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    26   7.5  

>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 518 VSWKLIALWENNKVYFKILNTERNQYLVLGVGTNWNG 628
           + +K I L++NN+   KILN  R    V+ VGT  NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 422 VHKLNRVFGEDKSELNWETIPDDVL 348
           +H +     EDKS+L +ETIPD VL
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPVL 33


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 149 ESAAYRDATKRHRITIAGFIFGASSPRAEFLQPGGSTSSRAA 24
           E+    ++TKRH+I+   +++     R E L P G+   R +
Sbjct: 788 EALDVAESTKRHKISATNYLYTIKVVRGEGLHPDGAGKIRTS 829


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 337 SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 438
           S  P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 367 VSQLSSDLSSPKTRLSLCTSATV 435
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 178 QLYNSVVVADYDSAVEKSKHLYEEKKAKSSQM 273
           QL N     DY+   E++K LY+E+K+  S++
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKSFLSKI 215


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 225 KEQAFIRGE-ESEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKD 353
           K+ + IR   +S + ++   K+++ NK+N +E A Q W +  K+
Sbjct: 132 KKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 591 NTWYWESALTGTATIWAFGVQQR 659
           N W    AL+  ATIW   VQ+R
Sbjct: 118 NGWMGSKALSQLATIWGLEVQRR 140


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
 Frame = +1

Query: 46  PPGCRNSARGLDAPKMKPAIVILCL----FVASLYAADSDVPNDILEEQLYNSVVVADY- 210
           PP CR +    DAP + P   +  L     V     A +  P+D  +  +   + ++DY 
Sbjct: 279 PPNCRKATLSFDAPTVPPRKYLETLQPNQSVCIAIGAMAHGPDDFSDGWVDEKISISDYP 338

Query: 211 -DSAVEKSKHLY 243
             +++  SK L+
Sbjct: 339 LSASIACSKFLH 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,126,389
Number of Sequences: 5004
Number of extensions: 58591
Number of successful extensions: 212
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)