Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0297.Seq
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0378 - 2946916-2947590                                           29   3.4  
01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965           29   3.4  

>12_01_0378 - 2946916-2947590
          Length = 224

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +1

Query: 13  HRXAAALELVDPPGCRNSARGLDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNS 192
           +R A  + + +P G      G+    ++P +++L    ASL AA++ VP    + ++  +
Sbjct: 71  YRLAVNVTMYNPSG----RAGVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQPRMSTT 126

Query: 193 VVVADYD 213
           VV  D+D
Sbjct: 127 VVAIDFD 133


>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
          Length = 675

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 398 GEDKSELNWETIPDDVLGALEPKLIGVLHAVHLVVSYQFVH 276
           GED++ LNWET     LGA      G+ H +H   + +FVH
Sbjct: 462 GEDRTPLNWETRVRIALGAAR----GIAH-IHTENNGKFVH 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,651,591
Number of Sequences: 37544
Number of extensions: 420877
Number of successful extensions: 1235
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)