Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0297.Seq
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical pr...    31   0.77 
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    31   0.77 
Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf (pumilio/...    30   2.3  
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical
           protein F36F2.3b protein.
          Length = 363

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = +2

Query: 179 SFTIASSSPITTVRLKRASIYTRRRKRSHHKCREQTDTKQQDE 307
           SFT+ASS P T +R+++ S  +  +++   + R + D +++DE
Sbjct: 285 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEE-RSKRDRRKKDE 326


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical protein
            F36F2.3a protein.
          Length = 1128

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = +2

Query: 179  SFTIASSSPITTVRLKRASIYTRRRKRSHHKCREQTDTKQQDE 307
            SFT+ASS P T +R+++ S  +  +++   + R + D +++DE
Sbjct: 1050 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEE-RSKRDRRKKDE 1091


>Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical
           protein F18A11.1 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +3

Query: 261 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 437
           ++  V+++L  N K+ C ++  QL       IVR+C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
           protein C44H9.4 protein.
          Length = 1099

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 554 KVYFKILNTERNQYLVLGVGTNWNGDHMG 640
           + YF++L+ E N+Y+++    N +G H G
Sbjct: 156 RAYFRVLSAEDNKYILIACHANLHGLHRG 184


>AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 7 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +3

Query: 261 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 437
           ++  V+++L  N K+ C ++  QL       IVR+C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 331 FGSRAPRTSSGIVSQLSSDL--SSPKTRLSLCTSATVS 438
           FG  APRT SG + Q S++L  S+PKT       A++S
Sbjct: 145 FGVLAPRTLSGSIPQTSTNLEDSTPKTSTGGRFGASIS 182


>Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical
           protein C38C10.3 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 343 APRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 438
           A + SSG+VSQ+SS  SS + R +L   ++ S
Sbjct: 91  AVKNSSGLVSQISSTTSSERKRRTLARPSSSS 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,497,268
Number of Sequences: 27780
Number of extensions: 341965
Number of successful extensions: 1077
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)