Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0296.Seq
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    26   0.50 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    24   1.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    24   1.5  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    24   2.0  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    24   2.0  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    24   2.0  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    24   2.0  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 75  ARAEFLQPGGSTSSRAAXXRVE 10
           A+ EFL PGGS   R A   ++
Sbjct: 66  AKCEFLNPGGSVKDRIAYRMIQ 87


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 435 NSLQNYVC*NNKYIHTYKENNFDD 364
           +SL N    NN Y + Y  NN+++
Sbjct: 82  SSLSNNTIHNNNYKYNYNNNNYNN 105


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 435 NSLQNYVC*NNKYIHTYKENNFDD 364
           +SL N    NN Y + Y  NN+++
Sbjct: 82  SSLSNNTIHNNNYKYNYNNNNYNN 105


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 435 NSLQNYVC*NNKYIHTYKENNFD 367
           +SL N    NN Y + Y  NN++
Sbjct: 83  SSLSNNTIHNNNYKYNYNNNNYN 105


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 435 NSLQNYVC*NNKYIHTYKENNFD 367
           +SL N    NN Y + Y  NN++
Sbjct: 83  SSLSNNTIHNNNYKYNYNNNNYN 105


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 435 NSLQNYVC*NNKYIHTYKENNFD 367
           +SL N    NN Y + Y  NN++
Sbjct: 83  SSLSNNTIHNNNYKYNYNNNNYN 105


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 435 NSLQNYVC*NNKYIHTYKENNFD 367
           +SL N    NN Y + Y  NN++
Sbjct: 83  SSLSNNTIHNNNYKYNYNNNNYN 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,226
Number of Sequences: 438
Number of extensions: 3203
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)